Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0646 and Atu8084 are separated by 324 nucleotides Atu8084 and Atu0647 are separated by 155 nucleotides
Atu0646: Atu0646 - methyl-accepting chemotaxis protein A, at 634,672 to 636,495
Atu0646
Atu8084: Atu8084 - hypothetical protein, at 636,820 to 637,329
Atu8084
Atu0647: Atu0647 - phosphoribosylamine--glycine ligase, at 637,485 to 638,756
Atu0647
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2 at 635.924 kb on - strand, within Atu0646 at 635.953 kb on - strand, within Atu0646 at 636.002 kb on - strand, within Atu0646 at 636.014 kb on - strand, within Atu0646 at 636.018 kb on + strand, within Atu0646 at 636.026 kb on - strand, within Atu0646 at 636.068 kb on - strand, within Atu0646 at 636.068 kb on - strand, within Atu0646 at 636.078 kb on - strand, within Atu0646 at 636.104 kb on + strand, within Atu0646 at 636.104 kb on + strand, within Atu0646 at 636.112 kb on - strand, within Atu0646 at 636.122 kb on - strand, within Atu0646 at 636.136 kb on - strand, within Atu0646 at 636.152 kb on + strand, within Atu0646 at 636.423 kb on - strand at 636.461 kb on - strand at 636.532 kb on - strand at 636.560 kb on + strand at 636.560 kb on + strand at 636.568 kb on - strand at 636.596 kb on - strand at 636.835 kb on + strand at 636.979 kb on - strand, within Atu8084 at 637.002 kb on - strand, within Atu8084 at 637.013 kb on + strand, within Atu8084 at 637.013 kb on - strand, within Atu8084 at 637.161 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.176 kb on - strand, within Atu8084 at 637.176 kb on - strand, within Atu8084 at 637.291 kb on + strand at 637.470 kb on + strand at 637.565 kb on + strand at 637.565 kb on + strand at 637.661 kb on - strand, within Atu0647 at 637.664 kb on - strand, within Atu0647 at 637.831 kb on + strand, within Atu0647 at 638.216 kb on + strand, within Atu0647 at 638.216 kb on + strand, within Atu0647 at 638.221 kb on + strand, within Atu0647
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days remove 635,924 - Atu0646 0.69 -1.2 635,953 - Atu0646 0.70 -0.5 636,002 - Atu0646 0.73 +0.0 636,014 - Atu0646 0.74 +0.3 636,018 + Atu0646 0.74 +0.7 636,026 - Atu0646 0.74 +1.6 636,068 - Atu0646 0.77 +0.4 636,068 - Atu0646 0.77 -0.3 636,078 - Atu0646 0.77 -1.3 636,104 + Atu0646 0.79 -0.4 636,104 + Atu0646 0.79 -0.5 636,112 - Atu0646 0.79 +1.2 636,122 - Atu0646 0.79 -0.3 636,136 - Atu0646 0.80 -0.1 636,152 + Atu0646 0.81 +0.6 636,423 - +0.2 636,461 - +0.4 636,532 - -0.4 636,560 + +0.2 636,560 + +0.3 636,568 - +0.2 636,596 - -0.3 636,835 + +0.4 636,979 - Atu8084 0.31 -1.2 637,002 - Atu8084 0.36 -0.2 637,013 + Atu8084 0.38 -1.4 637,013 - Atu8084 0.38 -1.4 637,161 + Atu8084 0.67 +0.1 637,163 + Atu8084 0.67 -0.5 637,163 + Atu8084 0.67 -1.0 637,163 + Atu8084 0.67 -0.8 637,163 + Atu8084 0.67 -0.5 637,163 + Atu8084 0.67 +2.5 637,171 - Atu8084 0.69 -1.0 637,171 - Atu8084 0.69 +0.0 637,171 - Atu8084 0.69 -1.6 637,171 - Atu8084 0.69 +0.6 637,176 - Atu8084 0.70 +0.9 637,176 - Atu8084 0.70 -1.6 637,291 + -1.0 637,470 + +0.0 637,565 + +0.2 637,565 + -0.4 637,661 - Atu0647 0.14 -1.0 637,664 - Atu0647 0.14 -0.1 637,831 + Atu0647 0.27 +0.3 638,216 + Atu0647 0.57 -2.6 638,216 + Atu0647 0.57 -1.1 638,221 + Atu0647 0.58 +1.4
Or see this region's nucleotide sequence