Strain Fitness in Agrobacterium fabrum C58 around Atu5127

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5126 and Atu5127 overlap by 4 nucleotidesAtu5127 and Atu5128 overlap by 11 nucleotidesAtu5128 and Atu5129 are separated by 27 nucleotides Atu5126: Atu5126 - ABC transporter nucleotide binding/ATPase(putrescine), at 133,260 to 134,372 Atu5126 Atu5127: Atu5127 - ABC transporter membrane spanning protein (mannopine), at 134,369 to 135,271 Atu5127 Atu5128: Atu5128 - ABC transporter membrane spanning protein (mannopine), at 135,261 to 136,118 Atu5128 Atu5129: Atu5129 - ABC transporter substrate binding protein (mannopine), at 136,146 to 137,228 Atu5129 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.373 kb on - strand, within Atu5126at 133.378 kb on - strand, within Atu5126at 133.378 kb on - strand, within Atu5126at 133.386 kb on + strand, within Atu5126at 133.394 kb on - strand, within Atu5126at 133.449 kb on - strand, within Atu5126at 133.539 kb on - strand, within Atu5126at 133.586 kb on - strand, within Atu5126at 133.657 kb on + strand, within Atu5126at 133.675 kb on + strand, within Atu5126at 133.711 kb on + strand, within Atu5126at 133.711 kb on + strand, within Atu5126at 133.782 kb on - strand, within Atu5126at 133.784 kb on - strand, within Atu5126at 133.801 kb on + strand, within Atu5126at 133.801 kb on + strand, within Atu5126at 133.809 kb on - strand, within Atu5126at 133.811 kb on + strand, within Atu5126at 133.811 kb on + strand, within Atu5126at 133.819 kb on - strand, within Atu5126at 133.826 kb on + strand, within Atu5126at 133.859 kb on + strand, within Atu5126at 133.879 kb on + strand, within Atu5126at 133.879 kb on + strand, within Atu5126at 133.891 kb on + strand, within Atu5126at 133.909 kb on - strand, within Atu5126at 133.932 kb on - strand, within Atu5126at 134.059 kb on + strand, within Atu5126at 134.101 kb on + strand, within Atu5126at 134.166 kb on - strand, within Atu5126at 134.217 kb on + strand, within Atu5126at 134.227 kb on + strand, within Atu5126at 134.227 kb on + strand, within Atu5126at 134.227 kb on + strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.235 kb on - strand, within Atu5126at 134.237 kb on + strand, within Atu5126at 134.237 kb on + strand, within Atu5126at 134.245 kb on - strand, within Atu5126at 134.258 kb on + strand, within Atu5126at 134.258 kb on + strand, within Atu5126at 134.260 kb on - strand, within Atu5126at 134.367 kb on - strandat 134.443 kb on + strandat 134.547 kb on - strand, within Atu5127at 134.556 kb on + strand, within Atu5127at 134.564 kb on - strand, within Atu5127at 134.572 kb on - strand, within Atu5127at 134.574 kb on - strand, within Atu5127at 134.616 kb on - strand, within Atu5127at 134.621 kb on + strand, within Atu5127at 134.654 kb on + strand, within Atu5127at 134.662 kb on - strand, within Atu5127at 134.688 kb on + strand, within Atu5127at 134.698 kb on + strand, within Atu5127at 134.698 kb on + strand, within Atu5127at 134.706 kb on - strand, within Atu5127at 134.706 kb on - strand, within Atu5127at 134.706 kb on - strand, within Atu5127at 134.737 kb on + strand, within Atu5127at 134.745 kb on + strand, within Atu5127at 134.750 kb on + strand, within Atu5127at 134.750 kb on + strand, within Atu5127at 134.750 kb on - strand, within Atu5127at 134.758 kb on - strand, within Atu5127at 134.782 kb on + strand, within Atu5127at 134.790 kb on - strand, within Atu5127at 134.824 kb on - strand, within Atu5127at 134.835 kb on - strand, within Atu5127at 134.851 kb on + strand, within Atu5127at 134.859 kb on - strand, within Atu5127at 134.859 kb on - strand, within Atu5127at 134.871 kb on - strand, within Atu5127at 134.894 kb on - strand, within Atu5127at 134.994 kb on + strand, within Atu5127at 135.083 kb on + strand, within Atu5127at 135.102 kb on - strand, within Atu5127at 135.102 kb on - strand, within Atu5127at 135.107 kb on - strand, within Atu5127at 135.139 kb on + strand, within Atu5127at 135.139 kb on + strand, within Atu5127at 135.142 kb on + strand, within Atu5127at 135.147 kb on - strand, within Atu5127at 135.157 kb on - strand, within Atu5127at 135.165 kb on - strand, within Atu5127at 135.179 kb on + strand, within Atu5127at 135.187 kb on - strandat 135.194 kb on - strandat 135.251 kb on + strandat 135.251 kb on + strandat 135.251 kb on + strandat 135.256 kb on + strandat 135.259 kb on - strandat 135.259 kb on - strandat 135.314 kb on + strandat 135.322 kb on - strandat 135.323 kb on + strandat 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.401 kb on + strand, within Atu5128at 135.417 kb on + strand, within Atu5128at 135.425 kb on - strand, within Atu5128at 135.427 kb on + strand, within Atu5128at 135.459 kb on + strand, within Atu5128at 135.481 kb on + strand, within Atu5128at 135.637 kb on + strand, within Atu5128at 135.637 kb on + strand, within Atu5128at 135.645 kb on - strand, within Atu5128at 135.645 kb on - strand, within Atu5128at 135.651 kb on - strand, within Atu5128at 135.672 kb on + strand, within Atu5128at 135.680 kb on - strand, within Atu5128at 135.702 kb on + strand, within Atu5128at 135.720 kb on - strand, within Atu5128at 135.746 kb on - strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.755 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.795 kb on + strand, within Atu5128at 135.802 kb on + strand, within Atu5128at 135.828 kb on + strand, within Atu5128at 135.836 kb on - strand, within Atu5128at 135.886 kb on - strand, within Atu5128at 135.886 kb on - strand, within Atu5128at 136.076 kb on + strandat 136.099 kb on - strandat 136.100 kb on - strandat 136.109 kb on - strandat 136.119 kb on + strandat 136.119 kb on - strandat 136.119 kb on - strandat 136.121 kb on - strandat 136.153 kb on + strandat 136.207 kb on + strandat 136.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
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133,373 - Atu5126 0.10 +0.6
133,378 - Atu5126 0.11 +0.1
133,378 - Atu5126 0.11 -0.9
133,386 + Atu5126 0.11 +0.2
133,394 - Atu5126 0.12 -0.0
133,449 - Atu5126 0.17 -0.4
133,539 - Atu5126 0.25 -1.2
133,586 - Atu5126 0.29 +0.8
133,657 + Atu5126 0.36 -0.7
133,675 + Atu5126 0.37 -0.0
133,711 + Atu5126 0.41 -0.2
133,711 + Atu5126 0.41 +0.6
133,782 - Atu5126 0.47 -1.3
133,784 - Atu5126 0.47 +0.9
133,801 + Atu5126 0.49 -0.3
133,801 + Atu5126 0.49 -0.0
133,809 - Atu5126 0.49 -0.4
133,811 + Atu5126 0.50 +1.2
133,811 + Atu5126 0.50 -1.8
133,819 - Atu5126 0.50 -0.1
133,826 + Atu5126 0.51 +0.5
133,859 + Atu5126 0.54 +1.2
133,879 + Atu5126 0.56 +0.2
133,879 + Atu5126 0.56 -0.2
133,891 + Atu5126 0.57 +0.5
133,909 - Atu5126 0.58 +0.2
133,932 - Atu5126 0.60 +0.6
134,059 + Atu5126 0.72 +1.2
134,101 + Atu5126 0.76 -0.4
134,166 - Atu5126 0.81 -0.0
134,217 + Atu5126 0.86 -0.0
134,227 + Atu5126 0.87 +1.0
134,227 + Atu5126 0.87 -0.5
134,227 + Atu5126 0.87 +0.6
134,235 - Atu5126 0.88 -0.2
134,235 - Atu5126 0.88 -0.5
134,235 - Atu5126 0.88 -0.8
134,235 - Atu5126 0.88 +0.5
134,235 - Atu5126 0.88 -0.9
134,235 - Atu5126 0.88 +0.2
134,235 - Atu5126 0.88 -1.3
134,235 - Atu5126 0.88 -0.1
134,235 - Atu5126 0.88 +0.2
134,237 + Atu5126 0.88 -1.3
134,237 + Atu5126 0.88 -1.0
134,245 - Atu5126 0.88 +0.1
134,258 + Atu5126 0.90 +0.4
134,258 + Atu5126 0.90 -3.3
134,260 - Atu5126 0.90 +0.0
134,367 - +0.9
134,443 + -0.3
134,547 - Atu5127 0.20 -0.5
134,556 + Atu5127 0.21 -1.0
134,564 - Atu5127 0.22 -0.2
134,572 - Atu5127 0.22 -0.0
134,574 - Atu5127 0.23 -1.4
134,616 - Atu5127 0.27 -1.0
134,621 + Atu5127 0.28 -0.6
134,654 + Atu5127 0.32 +0.3
134,662 - Atu5127 0.32 +0.0
134,688 + Atu5127 0.35 -0.0
134,698 + Atu5127 0.36 +0.4
134,698 + Atu5127 0.36 -0.5
134,706 - Atu5127 0.37 +0.6
134,706 - Atu5127 0.37 -0.4
134,706 - Atu5127 0.37 -0.3
134,737 + Atu5127 0.41 -0.2
134,745 + Atu5127 0.42 +1.4
134,750 + Atu5127 0.42 -0.4
134,750 + Atu5127 0.42 -0.1
134,750 - Atu5127 0.42 -1.0
134,758 - Atu5127 0.43 -0.0
134,782 + Atu5127 0.46 -0.6
134,790 - Atu5127 0.47 -1.1
134,824 - Atu5127 0.50 -0.4
134,835 - Atu5127 0.52 +0.8
134,851 + Atu5127 0.53 -0.6
134,859 - Atu5127 0.54 -1.5
134,859 - Atu5127 0.54 -0.6
134,871 - Atu5127 0.56 -0.3
134,894 - Atu5127 0.58 -0.2
134,994 + Atu5127 0.69 +0.0
135,083 + Atu5127 0.79 -0.9
135,102 - Atu5127 0.81 +0.2
135,102 - Atu5127 0.81 -0.4
135,107 - Atu5127 0.82 -1.5
135,139 + Atu5127 0.85 -0.5
135,139 + Atu5127 0.85 +0.8
135,142 + Atu5127 0.86 +0.4
135,147 - Atu5127 0.86 +0.2
135,157 - Atu5127 0.87 +0.0
135,165 - Atu5127 0.88 +0.2
135,179 + Atu5127 0.90 +0.2
135,187 - +1.2
135,194 - +0.3
135,251 + +0.5
135,251 + +0.8
135,251 + +0.1
135,256 + +0.4
135,259 - -0.5
135,259 - +1.8
135,314 + -0.2
135,322 - +0.2
135,323 + -0.0
135,350 + Atu5128 0.10 +0.2
135,350 + Atu5128 0.10 -1.2
135,350 + Atu5128 0.10 +0.0
135,350 + Atu5128 0.10 +0.2
135,350 + Atu5128 0.10 +1.8
135,358 - Atu5128 0.11 +0.4
135,358 - Atu5128 0.11 +0.0
135,358 - Atu5128 0.11 +0.1
135,358 - Atu5128 0.11 +0.6
135,358 - Atu5128 0.11 -1.1
135,401 + Atu5128 0.16 +0.3
135,417 + Atu5128 0.18 +0.4
135,425 - Atu5128 0.19 -0.3
135,427 + Atu5128 0.19 +0.2
135,459 + Atu5128 0.23 +0.4
135,481 + Atu5128 0.26 -0.3
135,637 + Atu5128 0.44 +0.6
135,637 + Atu5128 0.44 +0.8
135,645 - Atu5128 0.45 -0.1
135,645 - Atu5128 0.45 +0.0
135,651 - Atu5128 0.45 +0.8
135,672 + Atu5128 0.48 -1.1
135,680 - Atu5128 0.49 -1.5
135,702 + Atu5128 0.51 +0.1
135,720 - Atu5128 0.53 +0.0
135,746 - Atu5128 0.57 -0.1
135,753 + Atu5128 0.57 -0.0
135,753 + Atu5128 0.57 -1.4
135,753 + Atu5128 0.57 +0.2
135,753 + Atu5128 0.57 +1.1
135,753 + Atu5128 0.57 +0.5
135,753 + Atu5128 0.57 -1.2
135,755 - Atu5128 0.58 +0.1
135,761 - Atu5128 0.58 -0.6
135,761 - Atu5128 0.58 -1.7
135,761 - Atu5128 0.58 -0.4
135,787 + Atu5128 0.61 +0.6
135,787 + Atu5128 0.61 -1.8
135,787 + Atu5128 0.61 -0.0
135,795 + Atu5128 0.62 -1.0
135,802 + Atu5128 0.63 +1.1
135,828 + Atu5128 0.66 +0.1
135,836 - Atu5128 0.67 +0.0
135,886 - Atu5128 0.73 +0.2
135,886 - Atu5128 0.73 -0.7
136,076 + +0.7
136,099 - -0.6
136,100 - +0.5
136,109 - -1.3
136,119 + -0.2
136,119 - -1.2
136,119 - +0.2
136,121 - +0.6
136,153 + +0.4
136,207 + +0.5
136,225 + +0.6

Or see this region's nucleotide sequence