Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0621 and Atu0622 are separated by 227 nucleotides Atu0622 and Atu0623 are separated by 70 nucleotides Atu0623 and Atu0624 are separated by 82 nucleotides
Atu0621: Atu0621 - MFS permease, at 609,579 to 610,976
Atu0621
Atu0622: Atu0622 - metallo-beta-lactamase superfamily protein, at 611,204 to 612,187
Atu0622
Atu0623: Atu0623 - hypothetical protein, at 612,258 to 612,416
Atu0623
Atu0624: Atu0624 - inosine-5`-monophosphate dehydrogenase, at 612,499 to 613,872
Atu0624
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 610.249 kb on - strand, within Atu0621 at 610.351 kb on - strand, within Atu0621 at 610.417 kb on + strand, within Atu0621 at 610.556 kb on - strand, within Atu0621 at 610.565 kb on + strand, within Atu0621 at 610.599 kb on - strand, within Atu0621 at 610.599 kb on - strand, within Atu0621 at 610.628 kb on - strand, within Atu0621 at 610.663 kb on + strand, within Atu0621 at 610.663 kb on + strand, within Atu0621 at 610.671 kb on - strand, within Atu0621 at 610.683 kb on + strand, within Atu0621 at 610.701 kb on - strand, within Atu0621 at 610.720 kb on + strand, within Atu0621 at 610.739 kb on + strand, within Atu0621 at 610.836 kb on - strand, within Atu0621 at 610.983 kb on + strand at 611.122 kb on + strand at 611.122 kb on + strand at 611.132 kb on - strand at 611.216 kb on + strand at 611.245 kb on + strand at 611.260 kb on + strand at 611.304 kb on + strand, within Atu0622 at 611.482 kb on + strand, within Atu0622 at 611.482 kb on + strand, within Atu0622 at 611.515 kb on + strand, within Atu0622 at 611.515 kb on + strand, within Atu0622 at 611.645 kb on + strand, within Atu0622 at 611.660 kb on - strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.789 kb on + strand, within Atu0622 at 611.809 kb on - strand, within Atu0622 at 611.820 kb on - strand, within Atu0622 at 611.888 kb on + strand, within Atu0622 at 611.971 kb on + strand, within Atu0622 at 612.116 kb on + strand at 612.139 kb on + strand at 612.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days remove 610,249 - Atu0621 0.48 -0.4 610,351 - Atu0621 0.55 +0.7 610,417 + Atu0621 0.60 +0.8 610,556 - Atu0621 0.70 +0.4 610,565 + Atu0621 0.71 -0.7 610,599 - Atu0621 0.73 +2.5 610,599 - Atu0621 0.73 -0.1 610,628 - Atu0621 0.75 -0.6 610,663 + Atu0621 0.78 +0.6 610,663 + Atu0621 0.78 +0.2 610,671 - Atu0621 0.78 +1.0 610,683 + Atu0621 0.79 -0.4 610,701 - Atu0621 0.80 -2.2 610,720 + Atu0621 0.82 -1.5 610,739 + Atu0621 0.83 -1.2 610,836 - Atu0621 0.90 -0.1 610,983 + -0.7 611,122 + -0.8 611,122 + -0.6 611,132 - -0.6 611,216 + +0.9 611,245 + +0.0 611,260 + -1.0 611,304 + Atu0622 0.10 +0.9 611,482 + Atu0622 0.28 +1.4 611,482 + Atu0622 0.28 +0.6 611,515 + Atu0622 0.32 -0.3 611,515 + Atu0622 0.32 +0.9 611,645 + Atu0622 0.45 +0.5 611,660 - Atu0622 0.46 +0.6 611,756 + Atu0622 0.56 +0.1 611,756 + Atu0622 0.56 +1.3 611,756 + Atu0622 0.56 -0.4 611,756 + Atu0622 0.56 +0.6 611,756 + Atu0622 0.56 +1.6 611,764 - Atu0622 0.57 +0.3 611,764 - Atu0622 0.57 -0.3 611,764 - Atu0622 0.57 -0.9 611,789 + Atu0622 0.59 +0.2 611,809 - Atu0622 0.61 +1.0 611,820 - Atu0622 0.63 +0.2 611,888 + Atu0622 0.70 +0.2 611,971 + Atu0622 0.78 -0.1 612,116 + +0.2 612,139 + -0.3 612,181 + +0.0
Or see this region's nucleotide sequence