Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0221 and Atu0222 overlap by 4 nucleotides Atu0222 and Atu0223 are separated by 133 nucleotides Atu0223 and Atu0224 are separated by 101 nucleotides Atu0224 and Atu0225 are separated by 70 nucleotides Atu0225 and Atu0226 are separated by 118 nucleotides
Atu0221: Atu0221 - component of type IV pilus, at 226,493 to 228,076
Atu0221
Atu0222: Atu0222 - components of type IV pilus, at 228,073 to 228,879
Atu0222
Atu0223: Atu0223 - components of type IV pilus, prepilin peptidase, at 229,013 to 229,525
Atu0223
Atu0224: Atu0224 - components of type IV pilus, pilin subunit, at 229,627 to 229,818
Atu0224
Atu0225: Atu0225 - hypothetical protein, at 229,889 to 230,143
Atu0225
Atu0226: Atu0226 - PilQ, at 230,262 to 230,645
Atu0226
Position (kb) 229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 228.043 kb on - strand at 228.162 kb on - strand, within Atu0222 at 228.164 kb on - strand, within Atu0222 at 228.164 kb on - strand, within Atu0222 at 228.248 kb on + strand, within Atu0222 at 228.248 kb on + strand, within Atu0222 at 228.248 kb on + strand, within Atu0222 at 228.248 kb on + strand, within Atu0222 at 228.254 kb on + strand, within Atu0222 at 228.256 kb on - strand, within Atu0222 at 228.334 kb on - strand, within Atu0222 at 228.356 kb on - strand, within Atu0222 at 228.372 kb on - strand, within Atu0222 at 228.392 kb on - strand, within Atu0222 at 228.428 kb on - strand, within Atu0222 at 228.460 kb on + strand, within Atu0222 at 228.566 kb on + strand, within Atu0222 at 228.566 kb on + strand, within Atu0222 at 228.566 kb on + strand, within Atu0222 at 228.574 kb on - strand, within Atu0222 at 228.574 kb on - strand, within Atu0222 at 228.583 kb on + strand, within Atu0222 at 228.585 kb on - strand, within Atu0222 at 228.661 kb on - strand, within Atu0222 at 228.922 kb on + strand at 229.035 kb on + strand at 229.048 kb on - strand at 229.070 kb on - strand, within Atu0223 at 229.121 kb on - strand, within Atu0223 at 229.190 kb on + strand, within Atu0223 at 229.218 kb on - strand, within Atu0223 at 229.222 kb on + strand, within Atu0223 at 229.272 kb on + strand, within Atu0223 at 229.272 kb on + strand, within Atu0223 at 229.280 kb on - strand, within Atu0223 at 229.280 kb on - strand, within Atu0223 at 229.431 kb on + strand, within Atu0223 at 229.446 kb on - strand, within Atu0223 at 229.466 kb on + strand, within Atu0223 at 229.487 kb on - strand at 229.545 kb on + strand at 229.553 kb on - strand at 229.580 kb on + strand at 229.606 kb on - strand at 229.606 kb on - strand at 229.611 kb on - strand at 229.640 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.646 kb on + strand at 229.654 kb on - strand, within Atu0224 at 229.654 kb on - strand, within Atu0224 at 229.654 kb on - strand, within Atu0224 at 229.654 kb on - strand, within Atu0224 at 229.654 kb on - strand, within Atu0224 at 229.654 kb on - strand, within Atu0224 at 229.654 kb on - strand, within Atu0224 at 229.654 kb on - strand, within Atu0224 at 229.687 kb on + strand, within Atu0224 at 229.696 kb on - strand, within Atu0224 at 229.718 kb on + strand, within Atu0224 at 229.738 kb on + strand, within Atu0224 at 229.744 kb on - strand, within Atu0224 at 229.857 kb on + strand at 229.902 kb on + strand at 230.082 kb on + strand, within Atu0225 at 230.166 kb on - strand at 230.181 kb on - strand at 230.202 kb on + strand at 230.205 kb on - strand at 230.205 kb on - strand at 230.290 kb on - strand at 230.290 kb on - strand at 230.295 kb on - strand at 230.388 kb on - strand, within Atu0226 at 230.463 kb on - strand, within Atu0226 at 230.470 kb on + strand, within Atu0226 at 230.470 kb on + strand, within Atu0226 at 230.478 kb on - strand, within Atu0226
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days remove 228,043 - -0.7 228,162 - Atu0222 0.11 -0.6 228,164 - Atu0222 0.11 -0.7 228,164 - Atu0222 0.11 +0.3 228,248 + Atu0222 0.22 -0.0 228,248 + Atu0222 0.22 -0.2 228,248 + Atu0222 0.22 +0.6 228,248 + Atu0222 0.22 +1.6 228,254 + Atu0222 0.22 +0.3 228,256 - Atu0222 0.23 +0.6 228,334 - Atu0222 0.32 -0.8 228,356 - Atu0222 0.35 +0.4 228,372 - Atu0222 0.37 -0.6 228,392 - Atu0222 0.40 +0.9 228,428 - Atu0222 0.44 +0.1 228,460 + Atu0222 0.48 -0.5 228,566 + Atu0222 0.61 +0.8 228,566 + Atu0222 0.61 -1.0 228,566 + Atu0222 0.61 +0.5 228,574 - Atu0222 0.62 -0.2 228,574 - Atu0222 0.62 -0.7 228,583 + Atu0222 0.63 +2.3 228,585 - Atu0222 0.63 -0.6 228,661 - Atu0222 0.73 +1.3 228,922 + +0.0 229,035 + -0.4 229,048 - +0.1 229,070 - Atu0223 0.11 -1.1 229,121 - Atu0223 0.21 +0.1 229,190 + Atu0223 0.35 +0.4 229,218 - Atu0223 0.40 +0.5 229,222 + Atu0223 0.41 -0.2 229,272 + Atu0223 0.50 +0.1 229,272 + Atu0223 0.50 +1.3 229,280 - Atu0223 0.52 +0.2 229,280 - Atu0223 0.52 +0.4 229,431 + Atu0223 0.81 +1.1 229,446 - Atu0223 0.84 +0.3 229,466 + Atu0223 0.88 +0.7 229,487 - -0.0 229,545 + -0.6 229,553 - -0.1 229,580 + +0.1 229,606 - -1.5 229,606 - +0.3 229,611 - -0.9 229,640 + -0.1 229,646 + +0.3 229,646 + +0.8 229,646 + -0.0 229,646 + +0.2 229,646 + +0.2 229,646 + +1.0 229,646 + -0.2 229,646 + +1.8 229,646 + -0.2 229,646 + -0.7 229,646 + -1.4 229,646 + -0.5 229,654 - Atu0224 0.14 -0.1 229,654 - Atu0224 0.14 -1.1 229,654 - Atu0224 0.14 -0.9 229,654 - Atu0224 0.14 +0.0 229,654 - Atu0224 0.14 -1.3 229,654 - Atu0224 0.14 +0.3 229,654 - Atu0224 0.14 +1.1 229,654 - Atu0224 0.14 -1.0 229,687 + Atu0224 0.31 +0.3 229,696 - Atu0224 0.36 -0.4 229,718 + Atu0224 0.47 -0.8 229,738 + Atu0224 0.58 -3.2 229,744 - Atu0224 0.61 +0.8 229,857 + -0.7 229,902 + -0.4 230,082 + Atu0225 0.76 -0.7 230,166 - -0.3 230,181 - -0.9 230,202 + +0.3 230,205 - +0.4 230,205 - +0.2 230,290 - +0.2 230,290 - -0.5 230,295 - -0.4 230,388 - Atu0226 0.33 -1.4 230,463 - Atu0226 0.52 +0.6 230,470 + Atu0226 0.54 -0.2 230,470 + Atu0226 0.54 +0.8 230,478 - Atu0226 0.56 +0.1
Or see this region's nucleotide sequence