Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3755 and Atu8067 are separated by 146 nucleotides Atu8067 and Atu3757 are separated by 101 nucleotides Atu3757 and Atu3758 are separated by 68 nucleotides Atu3758 and Atu3759 are separated by 148 nucleotides Atu3759 and Atu3760 are separated by 15 nucleotides
Atu3755: Atu3755 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 836,909 to 837,985
Atu3755
Atu8067: Atu8067 - 50S ribosomal protein L36, at 838,132 to 838,257
Atu8067
Atu3757: Atu3757 - hypothetical protein, at 838,359 to 838,979
Atu3757
Atu3758: Atu3758 - hypothetical protein, at 839,048 to 839,305
Atu3758
Atu3759: Atu3759 - hypothetical protein, at 839,454 to 839,759
Atu3759
Atu3760: Atu3760 - hypothetical protein, at 839,775 to 840,563
Atu3760
Position (kb) 838
839 Strain fitness (log2 ratio) -2
-1
0
1
2 at 837.408 kb on - strand, within Atu3755 at 837.516 kb on + strand, within Atu3755 at 837.524 kb on - strand, within Atu3755 at 837.569 kb on - strand, within Atu3755 at 837.598 kb on + strand, within Atu3755 at 837.617 kb on + strand, within Atu3755 at 837.962 kb on + strand at 837.972 kb on + strand at 837.993 kb on + strand at 838.018 kb on - strand at 838.308 kb on + strand at 838.349 kb on + strand at 838.349 kb on + strand at 838.541 kb on + strand, within Atu3757 at 838.614 kb on - strand, within Atu3757 at 838.895 kb on + strand, within Atu3757 at 838.947 kb on - strand at 838.975 kb on + strand at 839.412 kb on - strand at 839.469 kb on + strand at 839.553 kb on - strand, within Atu3759 at 839.729 kb on + strand at 839.737 kb on - strand at 839.773 kb on + strand at 839.776 kb on + strand at 839.827 kb on - strand at 839.928 kb on + strand, within Atu3760 at 839.968 kb on + strand, within Atu3760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days remove 837,408 - Atu3755 0.46 +0.8 837,516 + Atu3755 0.56 -0.4 837,524 - Atu3755 0.57 +0.6 837,569 - Atu3755 0.61 +0.2 837,598 + Atu3755 0.64 -1.9 837,617 + Atu3755 0.66 +0.2 837,962 + -0.6 837,972 + +0.2 837,993 + -0.0 838,018 - +1.6 838,308 + +1.8 838,349 + -0.7 838,349 + -0.8 838,541 + Atu3757 0.29 +1.8 838,614 - Atu3757 0.41 -0.1 838,895 + Atu3757 0.86 -2.1 838,947 - -0.7 838,975 + +2.5 839,412 - -0.1 839,469 + +1.2 839,553 - Atu3759 0.32 +0.7 839,729 + -0.6 839,737 - -2.0 839,773 + +0.4 839,776 + +0.5 839,827 - -1.8 839,928 + Atu3760 0.19 -0.1 839,968 + Atu3760 0.24 +0.1
Or see this region's nucleotide sequence