Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3550 and Atu3551 are separated by 161 nucleotides Atu3551 and Atu3553 are separated by 495 nucleotides
Atu3550: Atu3550 - succinoglycan transport protein, at 600,315 to 601,793
Atu3550
Atu3551: Atu3551 - glycosyltransferase, at 601,955 to 603,190
Atu3551
Atu3553: Atu3553 - hypothetical protein, at 603,686 to 605,014
Atu3553
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 600.956 kb on + strand, within Atu3550 at 600.969 kb on + strand, within Atu3550 at 600.990 kb on + strand, within Atu3550 at 601.053 kb on - strand, within Atu3550 at 601.079 kb on + strand, within Atu3550 at 601.128 kb on + strand, within Atu3550 at 601.142 kb on - strand, within Atu3550 at 601.166 kb on + strand, within Atu3550 at 601.174 kb on - strand, within Atu3550 at 601.194 kb on + strand, within Atu3550 at 601.195 kb on - strand, within Atu3550 at 601.222 kb on + strand, within Atu3550 at 601.269 kb on + strand, within Atu3550 at 601.277 kb on - strand, within Atu3550 at 601.363 kb on - strand, within Atu3550 at 601.402 kb on + strand, within Atu3550 at 601.440 kb on + strand, within Atu3550 at 601.501 kb on + strand, within Atu3550 at 601.562 kb on + strand, within Atu3550 at 601.570 kb on - strand, within Atu3550 at 601.708 kb on - strand at 601.728 kb on + strand at 601.728 kb on + strand at 601.736 kb on - strand at 601.755 kb on + strand at 601.768 kb on - strand at 601.826 kb on + strand at 601.834 kb on - strand at 601.894 kb on - strand at 601.960 kb on - strand at 601.960 kb on - strand at 601.960 kb on - strand at 601.960 kb on - strand at 601.977 kb on - strand at 601.980 kb on + strand at 602.099 kb on - strand, within Atu3551 at 602.110 kb on - strand, within Atu3551 at 602.162 kb on + strand, within Atu3551 at 602.196 kb on - strand, within Atu3551 at 602.239 kb on - strand, within Atu3551 at 602.268 kb on + strand, within Atu3551 at 602.484 kb on + strand, within Atu3551 at 602.492 kb on - strand, within Atu3551 at 602.560 kb on - strand, within Atu3551 at 602.593 kb on - strand, within Atu3551 at 602.678 kb on - strand, within Atu3551 at 602.707 kb on + strand, within Atu3551 at 602.753 kb on - strand, within Atu3551 at 602.753 kb on - strand, within Atu3551 at 602.776 kb on + strand, within Atu3551 at 602.829 kb on + strand, within Atu3551 at 602.891 kb on + strand, within Atu3551 at 602.938 kb on + strand, within Atu3551 at 602.986 kb on + strand, within Atu3551 at 602.992 kb on - strand, within Atu3551 at 603.041 kb on - strand, within Atu3551 at 603.053 kb on - strand, within Atu3551 at 603.078 kb on + strand at 603.315 kb on - strand at 603.509 kb on - strand at 603.616 kb on - strand at 603.640 kb on + strand at 603.648 kb on - strand at 603.648 kb on - strand at 603.648 kb on - strand at 603.671 kb on + strand at 603.698 kb on - strand at 603.715 kb on - strand at 603.717 kb on + strand at 603.717 kb on + strand at 603.717 kb on + strand at 603.725 kb on - strand at 603.725 kb on - strand at 603.758 kb on - strand at 603.773 kb on + strand at 603.838 kb on - strand, within Atu3553 at 603.838 kb on - strand, within Atu3553 at 603.840 kb on + strand, within Atu3553 at 603.840 kb on + strand, within Atu3553 at 603.840 kb on + strand, within Atu3553 at 603.848 kb on - strand, within Atu3553 at 603.848 kb on - strand, within Atu3553 at 603.848 kb on - strand, within Atu3553 at 603.857 kb on + strand, within Atu3553 at 603.882 kb on + strand, within Atu3553 at 603.882 kb on + strand, within Atu3553 at 603.890 kb on - strand, within Atu3553 at 603.890 kb on - strand, within Atu3553 at 604.058 kb on - strand, within Atu3553
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days remove 600,956 + Atu3550 0.43 -0.2 600,969 + Atu3550 0.44 -0.6 600,990 + Atu3550 0.46 +0.3 601,053 - Atu3550 0.50 -1.1 601,079 + Atu3550 0.52 -0.0 601,128 + Atu3550 0.55 +1.6 601,142 - Atu3550 0.56 +0.2 601,166 + Atu3550 0.58 +0.6 601,174 - Atu3550 0.58 +0.0 601,194 + Atu3550 0.59 -1.0 601,195 - Atu3550 0.59 +1.0 601,222 + Atu3550 0.61 -0.9 601,269 + Atu3550 0.65 -0.8 601,277 - Atu3550 0.65 -0.2 601,363 - Atu3550 0.71 +0.6 601,402 + Atu3550 0.73 -1.2 601,440 + Atu3550 0.76 +0.0 601,501 + Atu3550 0.80 +0.4 601,562 + Atu3550 0.84 +0.6 601,570 - Atu3550 0.85 +0.1 601,708 - +0.5 601,728 + +0.3 601,728 + -0.7 601,736 - -0.4 601,755 + +0.8 601,768 - -0.1 601,826 + -0.9 601,834 - -0.7 601,894 - -0.8 601,960 - -0.8 601,960 - -0.4 601,960 - +0.3 601,960 - -0.4 601,977 - -0.7 601,980 + +1.6 602,099 - Atu3551 0.12 -0.9 602,110 - Atu3551 0.13 +1.2 602,162 + Atu3551 0.17 -1.6 602,196 - Atu3551 0.19 -1.1 602,239 - Atu3551 0.23 -1.7 602,268 + Atu3551 0.25 +0.4 602,484 + Atu3551 0.43 -0.8 602,492 - Atu3551 0.43 +0.7 602,560 - Atu3551 0.49 -0.8 602,593 - Atu3551 0.52 +1.0 602,678 - Atu3551 0.58 -0.9 602,707 + Atu3551 0.61 -0.1 602,753 - Atu3551 0.65 +0.8 602,753 - Atu3551 0.65 -1.0 602,776 + Atu3551 0.66 -1.4 602,829 + Atu3551 0.71 -0.6 602,891 + Atu3551 0.76 -1.3 602,938 + Atu3551 0.80 -0.9 602,986 + Atu3551 0.83 +0.2 602,992 - Atu3551 0.84 +0.2 603,041 - Atu3551 0.88 -1.3 603,053 - Atu3551 0.89 -0.7 603,078 + -0.7 603,315 - +2.2 603,509 - +0.0 603,616 - +0.1 603,640 + +0.3 603,648 - +0.5 603,648 - -0.1 603,648 - -1.1 603,671 + -0.1 603,698 - +0.3 603,715 - -0.6 603,717 + +0.7 603,717 + -1.4 603,717 + +0.1 603,725 - +0.7 603,725 - +0.6 603,758 - -0.0 603,773 + -0.4 603,838 - Atu3553 0.11 +1.0 603,838 - Atu3553 0.11 +1.0 603,840 + Atu3553 0.12 +0.1 603,840 + Atu3553 0.12 +0.6 603,840 + Atu3553 0.12 +0.6 603,848 - Atu3553 0.12 -2.4 603,848 - Atu3553 0.12 -1.4 603,848 - Atu3553 0.12 +0.2 603,857 + Atu3553 0.13 +0.1 603,882 + Atu3553 0.15 +0.6 603,882 + Atu3553 0.15 +3.2 603,890 - Atu3553 0.15 +0.0 603,890 - Atu3553 0.15 -0.1 604,058 - Atu3553 0.28 +0.6
Or see this region's nucleotide sequence