Strain Fitness in Agrobacterium fabrum C58 around Atu5189

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5188 and Atu5189 overlap by 4 nucleotidesAtu5189 and Atu5190 are separated by 114 nucleotidesAtu5190 and Atu5191 are separated by 160 nucleotides Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083 Atu5188 Atu5189: Atu5189 - hypothetical protein, at 185,080 to 185,412 Atu5189 Atu5190: Atu5190 - hypothetical protein, at 185,527 to 186,249 Atu5190 Atu5191: Atu5191 - hypothetical protein, at 186,410 to 187,534 Atu5191 Position (kb) 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 184.128 kb on + strandat 184.128 kb on + strandat 184.136 kb on - strandat 184.137 kb on + strandat 184.203 kb on - strand, within Atu5188at 184.203 kb on - strand, within Atu5188at 184.281 kb on + strand, within Atu5188at 184.297 kb on - strand, within Atu5188at 184.361 kb on + strand, within Atu5188at 184.369 kb on - strand, within Atu5188at 184.514 kb on + strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.568 kb on - strand, within Atu5188at 184.599 kb on + strand, within Atu5188at 184.606 kb on + strand, within Atu5188at 184.607 kb on - strand, within Atu5188at 184.607 kb on - strand, within Atu5188at 184.736 kb on - strand, within Atu5188at 184.764 kb on + strand, within Atu5188at 184.784 kb on - strand, within Atu5188at 184.784 kb on - strand, within Atu5188at 184.897 kb on - strand, within Atu5188at 184.897 kb on - strand, within Atu5188at 185.000 kb on - strandat 185.064 kb on + strandat 185.093 kb on + strandat 185.130 kb on + strand, within Atu5189at 185.161 kb on - strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.163 kb on + strand, within Atu5189at 185.169 kb on - strand, within Atu5189at 185.171 kb on - strand, within Atu5189at 185.178 kb on + strand, within Atu5189at 185.221 kb on + strand, within Atu5189at 185.235 kb on + strand, within Atu5189at 185.243 kb on - strand, within Atu5189at 185.291 kb on + strand, within Atu5189at 185.314 kb on + strand, within Atu5189at 185.415 kb on - strandat 185.415 kb on - strandat 185.461 kb on + strandat 185.531 kb on + strandat 185.536 kb on + strandat 185.539 kb on - strandat 185.544 kb on - strandat 185.579 kb on - strandat 185.660 kb on + strand, within Atu5190at 185.728 kb on - strand, within Atu5190at 185.751 kb on + strand, within Atu5190at 185.765 kb on + strand, within Atu5190at 185.841 kb on + strand, within Atu5190at 185.864 kb on - strand, within Atu5190at 185.875 kb on - strand, within Atu5190at 185.888 kb on + strand, within Atu5190at 186.020 kb on - strand, within Atu5190at 186.057 kb on + strand, within Atu5190at 186.060 kb on - strand, within Atu5190at 186.060 kb on - strand, within Atu5190at 186.161 kb on + strand, within Atu5190at 186.161 kb on + strand, within Atu5190at 186.169 kb on - strand, within Atu5190at 186.169 kb on - strand, within Atu5190at 186.223 kb on + strandat 186.223 kb on + strandat 186.231 kb on - strandat 186.288 kb on + strandat 186.288 kb on + strandat 186.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
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184,128 + +0.9
184,128 + -1.4
184,136 - -0.7
184,137 + -0.4
184,203 - Atu5188 0.11 +1.6
184,203 - Atu5188 0.11 -0.9
184,281 + Atu5188 0.19 -1.5
184,297 - Atu5188 0.20 -0.6
184,361 + Atu5188 0.27 +0.5
184,369 - Atu5188 0.28 -0.7
184,514 + Atu5188 0.42 -0.1
184,522 - Atu5188 0.43 -1.1
184,522 - Atu5188 0.43 +0.4
184,522 - Atu5188 0.43 -0.6
184,522 - Atu5188 0.43 -1.5
184,568 - Atu5188 0.48 +0.0
184,599 + Atu5188 0.51 +0.4
184,606 + Atu5188 0.52 -1.5
184,607 - Atu5188 0.52 +0.2
184,607 - Atu5188 0.52 +0.3
184,736 - Atu5188 0.65 +0.1
184,764 + Atu5188 0.68 -2.7
184,784 - Atu5188 0.70 +0.4
184,784 - Atu5188 0.70 -0.5
184,897 - Atu5188 0.81 +0.6
184,897 - Atu5188 0.81 -0.4
185,000 - +0.1
185,064 + +0.1
185,093 + +0.2
185,130 + Atu5189 0.15 -0.6
185,161 - Atu5189 0.24 -0.1
185,163 + Atu5189 0.25 -1.3
185,163 + Atu5189 0.25 -2.0
185,163 + Atu5189 0.25 +0.0
185,163 + Atu5189 0.25 -0.7
185,163 + Atu5189 0.25 -0.2
185,169 - Atu5189 0.27 -0.6
185,171 - Atu5189 0.27 -2.0
185,178 + Atu5189 0.29 +0.4
185,221 + Atu5189 0.42 -0.5
185,235 + Atu5189 0.47 -0.8
185,243 - Atu5189 0.49 +0.5
185,291 + Atu5189 0.63 -0.7
185,314 + Atu5189 0.70 -0.1
185,415 - -0.1
185,415 - -0.5
185,461 + -0.6
185,531 + +0.1
185,536 + -0.3
185,539 - -0.8
185,544 - -1.3
185,579 - +0.2
185,660 + Atu5190 0.18 +0.5
185,728 - Atu5190 0.28 +0.1
185,751 + Atu5190 0.31 +0.4
185,765 + Atu5190 0.33 +0.2
185,841 + Atu5190 0.43 +0.2
185,864 - Atu5190 0.47 +0.2
185,875 - Atu5190 0.48 +0.1
185,888 + Atu5190 0.50 +1.9
186,020 - Atu5190 0.68 +1.1
186,057 + Atu5190 0.73 -0.2
186,060 - Atu5190 0.74 -0.7
186,060 - Atu5190 0.74 +0.3
186,161 + Atu5190 0.88 -0.8
186,161 + Atu5190 0.88 -0.1
186,169 - Atu5190 0.89 -0.0
186,169 - Atu5190 0.89 -1.1
186,223 + -0.5
186,223 + -0.5
186,231 - -1.2
186,288 + +0.2
186,288 + +1.3
186,315 - -0.6

Or see this region's nucleotide sequence