Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2513 and Atu2514 are separated by 117 nucleotides Atu2514 and Atu2515 overlap by 4 nucleotides Atu2515 and Atu2516 are separated by 3 nucleotides Atu2516 and Atu2517 overlap by 4 nucleotides
Atu2513: Atu2513 - penicillin binding protein, at 2,481,431 to 2,482,942
Atu2513
Atu2514: Atu2514 - ABC transporter, nucleotide binding/ATPase protein (dipeptide), at 2,483,060 to 2,483,800
Atu2514
Atu2515: Atu2515 - ABC transporter, nucleotide binding/ATPase protein (dipeptide), at 2,483,797 to 2,484,627
Atu2515
Atu2516: Atu2516 - ABC transporter, membrane spanning protein (dipeptide), at 2,484,631 to 2,485,533
Atu2516
Atu2517: Atu2517 - ABC transporter, membrane spanning protein (dipeptide), at 2,485,530 to 2,486,549
Atu2517
Position (kb)
2483
2484
2485 Strain fitness (log2 ratio)
-2
-1
0
1 at 2482.860 kb on + strand at 2482.870 kb on - strand at 2483.026 kb on + strand at 2483.057 kb on + strand at 2483.091 kb on - strand at 2483.145 kb on - strand, within Atu2514 at 2483.194 kb on + strand, within Atu2514 at 2483.214 kb on + strand, within Atu2514 at 2483.241 kb on - strand, within Atu2514 at 2483.303 kb on + strand, within Atu2514 at 2483.338 kb on + strand, within Atu2514 at 2483.338 kb on + strand, within Atu2514 at 2483.346 kb on - strand, within Atu2514 at 2483.388 kb on - strand, within Atu2514 at 2483.429 kb on + strand, within Atu2514 at 2483.458 kb on - strand, within Atu2514 at 2483.477 kb on + strand, within Atu2514 at 2483.482 kb on - strand, within Atu2514 at 2483.509 kb on + strand, within Atu2514 at 2483.535 kb on - strand, within Atu2514 at 2483.542 kb on + strand, within Atu2514 at 2483.583 kb on - strand, within Atu2514 at 2483.597 kb on + strand, within Atu2514 at 2483.605 kb on - strand, within Atu2514 at 2483.640 kb on - strand, within Atu2514 at 2483.674 kb on - strand, within Atu2514 at 2483.674 kb on - strand, within Atu2514 at 2483.843 kb on - strand at 2483.888 kb on + strand, within Atu2515 at 2483.896 kb on - strand, within Atu2515 at 2483.929 kb on - strand, within Atu2515 at 2483.938 kb on + strand, within Atu2515 at 2484.122 kb on - strand, within Atu2515 at 2484.164 kb on - strand, within Atu2515 at 2484.195 kb on - strand, within Atu2515 at 2484.408 kb on - strand, within Atu2515 at 2484.411 kb on + strand, within Atu2515 at 2484.460 kb on - strand, within Atu2515 at 2484.663 kb on + strand at 2484.663 kb on + strand at 2484.870 kb on + strand, within Atu2516 at 2484.889 kb on + strand, within Atu2516 at 2484.892 kb on - strand, within Atu2516 at 2484.907 kb on + strand, within Atu2516 at 2484.972 kb on - strand, within Atu2516 at 2485.008 kb on - strand, within Atu2516 at 2485.038 kb on - strand, within Atu2516 at 2485.042 kb on + strand, within Atu2516 at 2485.183 kb on + strand, within Atu2516 at 2485.260 kb on + strand, within Atu2516 at 2485.425 kb on + strand, within Atu2516 at 2485.437 kb on + strand, within Atu2516 at 2485.484 kb on - strand at 2485.577 kb on + strand at 2485.585 kb on - strand at 2485.610 kb on + strand at 2485.610 kb on - strand at 2485.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days remove 2,482,860 + -0.4 2,482,870 - +0.6 2,483,026 + +0.3 2,483,057 + -0.4 2,483,091 - +0.4 2,483,145 - Atu2514 0.11 -0.7 2,483,194 + Atu2514 0.18 +1.1 2,483,214 + Atu2514 0.21 -0.8 2,483,241 - Atu2514 0.24 +1.4 2,483,303 + Atu2514 0.33 +0.2 2,483,338 + Atu2514 0.38 -1.4 2,483,338 + Atu2514 0.38 +0.2 2,483,346 - Atu2514 0.39 +0.9 2,483,388 - Atu2514 0.44 +0.4 2,483,429 + Atu2514 0.50 -0.1 2,483,458 - Atu2514 0.54 -0.9 2,483,477 + Atu2514 0.56 -0.7 2,483,482 - Atu2514 0.57 +0.9 2,483,509 + Atu2514 0.61 +0.3 2,483,535 - Atu2514 0.64 -0.2 2,483,542 + Atu2514 0.65 -1.5 2,483,583 - Atu2514 0.71 +0.2 2,483,597 + Atu2514 0.72 +1.5 2,483,605 - Atu2514 0.74 -0.0 2,483,640 - Atu2514 0.78 -1.3 2,483,674 - Atu2514 0.83 +0.3 2,483,674 - Atu2514 0.83 -0.2 2,483,843 - -0.8 2,483,888 + Atu2515 0.11 +0.2 2,483,896 - Atu2515 0.12 -2.7 2,483,929 - Atu2515 0.16 -0.2 2,483,938 + Atu2515 0.17 -1.2 2,484,122 - Atu2515 0.39 -1.0 2,484,164 - Atu2515 0.44 -0.4 2,484,195 - Atu2515 0.48 -1.8 2,484,408 - Atu2515 0.74 -0.2 2,484,411 + Atu2515 0.74 -0.7 2,484,460 - Atu2515 0.80 -2.7 2,484,663 + +0.3 2,484,663 + -1.1 2,484,870 + Atu2516 0.26 +0.1 2,484,889 + Atu2516 0.29 +1.2 2,484,892 - Atu2516 0.29 -1.4 2,484,907 + Atu2516 0.31 -0.1 2,484,972 - Atu2516 0.38 -0.1 2,485,008 - Atu2516 0.42 -0.7 2,485,038 - Atu2516 0.45 -0.4 2,485,042 + Atu2516 0.46 +0.3 2,485,183 + Atu2516 0.61 -0.1 2,485,260 + Atu2516 0.70 -0.6 2,485,425 + Atu2516 0.88 -1.0 2,485,437 + Atu2516 0.89 -0.3 2,485,484 - +1.3 2,485,577 + -1.0 2,485,585 - +0.8 2,485,610 + -0.1 2,485,610 - -0.1 2,485,623 - +1.6
Or see this region's nucleotide sequence