Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF526

Experiment: 6H2_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF525 and GFF526 overlap by 4 nucleotidesGFF526 and GFF527 overlap by 1 nucleotides GFF525 - Putative membrane protein, at 256,315 to 257,382 GFF525 GFF526 - ABC-type multidrug transport system, permease component, at 257,379 to 260,120 GFF526 GFF527 - FIG01045128: hypothetical protein, at 260,120 to 261,244 GFF527 Position (kb) 257 258 259 260 261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 256.763 kb on + strand, within GFF525at 256.870 kb on - strand, within GFF525at 256.875 kb on + strand, within GFF525at 256.878 kb on + strand, within GFF525at 256.956 kb on - strand, within GFF525at 257.061 kb on + strand, within GFF525at 257.062 kb on - strand, within GFF525at 257.152 kb on - strand, within GFF525at 257.290 kb on + strandat 257.360 kb on + strandat 257.469 kb on - strandat 257.493 kb on - strandat 257.493 kb on - strandat 257.679 kb on + strand, within GFF526at 257.944 kb on + strand, within GFF526at 257.944 kb on + strand, within GFF526at 257.954 kb on + strand, within GFF526at 258.000 kb on + strand, within GFF526at 258.001 kb on - strand, within GFF526at 258.002 kb on + strand, within GFF526at 258.158 kb on + strand, within GFF526at 258.180 kb on + strand, within GFF526at 258.435 kb on + strand, within GFF526at 258.436 kb on - strand, within GFF526at 258.437 kb on + strand, within GFF526at 258.437 kb on + strand, within GFF526at 258.438 kb on - strand, within GFF526at 258.438 kb on - strand, within GFF526at 258.438 kb on - strand, within GFF526at 258.459 kb on + strand, within GFF526at 258.563 kb on + strand, within GFF526at 258.584 kb on + strand, within GFF526at 258.725 kb on + strand, within GFF526at 258.725 kb on + strand, within GFF526at 259.020 kb on + strand, within GFF526at 259.021 kb on - strand, within GFF526at 259.106 kb on + strand, within GFF526at 259.114 kb on - strand, within GFF526at 259.125 kb on - strand, within GFF526at 259.245 kb on + strand, within GFF526at 259.401 kb on + strand, within GFF526at 259.402 kb on - strand, within GFF526at 259.639 kb on + strand, within GFF526at 259.797 kb on + strand, within GFF526at 259.797 kb on + strand, within GFF526at 259.881 kb on - strandat 259.883 kb on + strandat 260.044 kb on + strandat 260.048 kb on + strandat 260.049 kb on - strandat 260.134 kb on + strandat 260.138 kb on - strandat 260.138 kb on - strandat 260.228 kb on + strandat 260.239 kb on + strand, within GFF527at 260.323 kb on + strand, within GFF527at 260.331 kb on - strand, within GFF527at 260.404 kb on + strand, within GFF527at 260.510 kb on - strand, within GFF527at 260.522 kb on + strand, within GFF527at 260.523 kb on - strand, within GFF527at 260.523 kb on - strand, within GFF527at 260.523 kb on - strand, within GFF527at 260.524 kb on + strand, within GFF527at 260.533 kb on + strand, within GFF527at 260.539 kb on + strand, within GFF527at 260.582 kb on - strand, within GFF527at 260.621 kb on - strand, within GFF527at 260.677 kb on + strand, within GFF527at 260.678 kb on - strand, within GFF527at 260.678 kb on - strand, within GFF527at 260.692 kb on - strand, within GFF527at 260.740 kb on - strand, within GFF527at 260.751 kb on + strand, within GFF527at 260.751 kb on + strand, within GFF527at 260.985 kb on + strand, within GFF527at 260.985 kb on + strand, within GFF527at 260.988 kb on + strand, within GFF527at 260.988 kb on + strand, within GFF527at 261.013 kb on - strand, within GFF527at 261.050 kb on - strand, within GFF527at 261.070 kb on + strand, within GFF527at 261.073 kb on + strand, within GFF527

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Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
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256,763 + GFF525 0.42 -0.2
256,870 - GFF525 0.52 -4.4
256,875 + GFF525 0.52 +1.0
256,878 + GFF525 0.53 +0.1
256,956 - GFF525 0.60 -2.6
257,061 + GFF525 0.70 +0.5
257,062 - GFF525 0.70 +0.2
257,152 - GFF525 0.78 +2.0
257,290 + -0.3
257,360 + +0.6
257,469 - -2.2
257,493 - +0.5
257,493 - -1.4
257,679 + GFF526 0.11 +0.1
257,944 + GFF526 0.21 +0.3
257,944 + GFF526 0.21 -0.7
257,954 + GFF526 0.21 +0.2
258,000 + GFF526 0.23 -0.1
258,001 - GFF526 0.23 -2.2
258,002 + GFF526 0.23 +0.3
258,158 + GFF526 0.28 +2.8
258,180 + GFF526 0.29 -0.6
258,435 + GFF526 0.39 -0.6
258,436 - GFF526 0.39 +0.9
258,437 + GFF526 0.39 +0.7
258,437 + GFF526 0.39 +2.1
258,438 - GFF526 0.39 +2.0
258,438 - GFF526 0.39 +2.3
258,438 - GFF526 0.39 +1.1
258,459 + GFF526 0.39 +0.0
258,563 + GFF526 0.43 -2.8
258,584 + GFF526 0.44 +1.4
258,725 + GFF526 0.49 +0.1
258,725 + GFF526 0.49 +0.3
259,020 + GFF526 0.60 -0.2
259,021 - GFF526 0.60 +1.3
259,106 + GFF526 0.63 +0.6
259,114 - GFF526 0.63 +0.9
259,125 - GFF526 0.64 +1.7
259,245 + GFF526 0.68 -0.1
259,401 + GFF526 0.74 +1.3
259,402 - GFF526 0.74 +0.2
259,639 + GFF526 0.82 -0.0
259,797 + GFF526 0.88 +1.0
259,797 + GFF526 0.88 -1.4
259,881 - +0.9
259,883 + +0.8
260,044 + +0.7
260,048 + -0.8
260,049 - -4.3
260,134 + +0.3
260,138 - +0.0
260,138 - -0.3
260,228 + -0.3
260,239 + GFF527 0.11 -2.2
260,323 + GFF527 0.18 -3.3
260,331 - GFF527 0.19 +0.5
260,404 + GFF527 0.25 +1.0
260,510 - GFF527 0.35 -0.6
260,522 + GFF527 0.36 -0.5
260,523 - GFF527 0.36 -0.7
260,523 - GFF527 0.36 -0.1
260,523 - GFF527 0.36 +1.0
260,524 + GFF527 0.36 -1.2
260,533 + GFF527 0.37 -2.8
260,539 + GFF527 0.37 +0.0
260,582 - GFF527 0.41 +0.7
260,621 - GFF527 0.45 -0.7
260,677 + GFF527 0.50 +0.5
260,678 - GFF527 0.50 +0.6
260,678 - GFF527 0.50 +1.9
260,692 - GFF527 0.51 +1.2
260,740 - GFF527 0.55 -0.8
260,751 + GFF527 0.56 -0.3
260,751 + GFF527 0.56 +0.8
260,985 + GFF527 0.77 +0.2
260,985 + GFF527 0.77 +0.8
260,988 + GFF527 0.77 +0.4
260,988 + GFF527 0.77 +0.8
261,013 - GFF527 0.79 -0.6
261,050 - GFF527 0.83 +0.5
261,070 + GFF527 0.84 -1.0
261,073 + GFF527 0.85 -3.8

Or see this region's nucleotide sequence