Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4788

Experiment: 6H2_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4786 and GFF4787 are separated by 10 nucleotidesGFF4787 and GFF4788 are separated by 44 nucleotidesGFF4788 and GFF4789 are separated by 62 nucleotides GFF4786 - UbiD family decarboxylase, MJ1133 type, at 93,558 to 94,985 GFF4786 GFF4787 - Hydroxyaromatic non-oxidative decarboxylase protein D (EC 4.1.1.-), at 94,996 to 95,232 GFF4787 GFF4788 - RNA polymerase sigma factor RpoS, at 95,277 to 96,269 GFF4788 GFF4789 - Lipoprotein NlpD, at 96,332 to 97,291 GFF4789 Position (kb) 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 94.350 kb on - strand, within GFF4786at 94.584 kb on + strand, within GFF4786at 94.584 kb on + strand, within GFF4786at 94.585 kb on - strand, within GFF4786at 94.585 kb on - strand, within GFF4786at 94.795 kb on + strand, within GFF4786at 94.795 kb on + strand, within GFF4786at 94.905 kb on + strandat 94.906 kb on - strandat 94.980 kb on - strandat 95.026 kb on - strand, within GFF4787at 95.069 kb on + strand, within GFF4787at 95.069 kb on + strand, within GFF4787at 95.070 kb on - strand, within GFF4787at 95.070 kb on - strand, within GFF4787at 95.071 kb on + strand, within GFF4787at 95.093 kb on - strand, within GFF4787at 95.095 kb on - strand, within GFF4787at 95.095 kb on - strand, within GFF4787at 95.095 kb on - strand, within GFF4787at 95.275 kb on - strandat 95.605 kb on - strand, within GFF4788at 95.637 kb on - strand, within GFF4788at 95.637 kb on - strand, within GFF4788at 95.709 kb on - strand, within GFF4788at 95.740 kb on - strand, within GFF4788at 95.740 kb on - strand, within GFF4788at 95.740 kb on - strand, within GFF4788at 95.837 kb on - strand, within GFF4788at 96.282 kb on - strandat 96.404 kb on - strandat 96.482 kb on - strand, within GFF4789at 96.482 kb on - strand, within GFF4789at 96.530 kb on - strand, within GFF4789at 96.539 kb on - strand, within GFF4789at 96.544 kb on - strand, within GFF4789at 96.567 kb on + strand, within GFF4789at 96.569 kb on + strand, within GFF4789at 96.846 kb on + strand, within GFF4789at 96.846 kb on + strand, within GFF4789at 96.850 kb on + strand, within GFF4789at 96.851 kb on - strand, within GFF4789at 97.022 kb on - strand, within GFF4789at 97.105 kb on - strand, within GFF4789at 97.105 kb on - strand, within GFF4789at 97.108 kb on + strand, within GFF4789at 97.122 kb on + strand, within GFF4789at 97.123 kb on - strand, within GFF4789at 97.126 kb on + strand, within GFF4789

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Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
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94,350 - GFF4786 0.55 -0.6
94,584 + GFF4786 0.72 +1.5
94,584 + GFF4786 0.72 +0.4
94,585 - GFF4786 0.72 -1.0
94,585 - GFF4786 0.72 -1.0
94,795 + GFF4786 0.87 -0.8
94,795 + GFF4786 0.87 +0.6
94,905 + -0.6
94,906 - +0.1
94,980 - -0.6
95,026 - GFF4787 0.13 +0.0
95,069 + GFF4787 0.31 -0.3
95,069 + GFF4787 0.31 -0.6
95,070 - GFF4787 0.31 -0.4
95,070 - GFF4787 0.31 +0.0
95,071 + GFF4787 0.32 +0.3
95,093 - GFF4787 0.41 +0.6
95,095 - GFF4787 0.42 -2.4
95,095 - GFF4787 0.42 +1.8
95,095 - GFF4787 0.42 +1.0
95,275 - +1.5
95,605 - GFF4788 0.33 -0.3
95,637 - GFF4788 0.36 +2.2
95,637 - GFF4788 0.36 +3.0
95,709 - GFF4788 0.44 +1.5
95,740 - GFF4788 0.47 +0.6
95,740 - GFF4788 0.47 +2.3
95,740 - GFF4788 0.47 +2.3
95,837 - GFF4788 0.56 -3.0
96,282 - +1.4
96,404 - +1.3
96,482 - GFF4789 0.16 +1.8
96,482 - GFF4789 0.16 -3.4
96,530 - GFF4789 0.21 -3.6
96,539 - GFF4789 0.22 +1.8
96,544 - GFF4789 0.22 +2.3
96,567 + GFF4789 0.24 +3.2
96,569 + GFF4789 0.25 -2.7
96,846 + GFF4789 0.54 -3.1
96,846 + GFF4789 0.54 -1.7
96,850 + GFF4789 0.54 +3.2
96,851 - GFF4789 0.54 +1.4
97,022 - GFF4789 0.72 +1.4
97,105 - GFF4789 0.81 -3.0
97,105 - GFF4789 0.81 +0.3
97,108 + GFF4789 0.81 +0.1
97,122 + GFF4789 0.82 +0.2
97,123 - GFF4789 0.82 +2.7
97,126 + GFF4789 0.83 +0.4

Or see this region's nucleotide sequence