Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF461

Experiment: 6H2_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF459 and GFF460 are separated by 51 nucleotidesGFF460 and GFF461 overlap by 16 nucleotidesGFF461 and GFF462 overlap by 32 nucleotidesGFF462 and GFF463 overlap by 23 nucleotides GFF459 - Outer membrane protein A precursor, at 179,610 to 180,272 GFF459 GFF460 - hypothetical protein, at 180,324 to 180,440 GFF460 GFF461 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3), at 180,425 to 182,758 GFF461 GFF462 - Acetyltransferase (EC 2.3.1.-), at 182,727 to 183,167 GFF462 GFF463 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 183,145 to 183,726 GFF463 Position (kb) 180 181 182 183Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 179.446 kb on + strandat 179.504 kb on - strandat 179.511 kb on + strandat 179.566 kb on - strandat 179.606 kb on + strandat 179.611 kb on + strandat 179.611 kb on + strandat 179.657 kb on + strandat 179.657 kb on + strandat 179.936 kb on + strand, within GFF459at 179.957 kb on + strand, within GFF459at 179.957 kb on + strand, within GFF459at 179.958 kb on - strand, within GFF459at 179.958 kb on - strand, within GFF459at 180.034 kb on + strand, within GFF459at 180.034 kb on + strand, within GFF459at 180.034 kb on + strand, within GFF459at 180.034 kb on + strand, within GFF459at 180.035 kb on - strand, within GFF459at 180.035 kb on - strand, within GFF459at 180.092 kb on + strand, within GFF459at 180.174 kb on - strand, within GFF459at 180.219 kb on + strandat 180.220 kb on - strandat 180.259 kb on - strandat 180.259 kb on - strandat 180.284 kb on - strandat 180.378 kb on - strand, within GFF460at 180.583 kb on + strandat 180.614 kb on - strandat 180.652 kb on - strandat 180.652 kb on - strandat 180.737 kb on + strand, within GFF461at 180.767 kb on + strand, within GFF461at 180.789 kb on + strand, within GFF461at 180.805 kb on + strand, within GFF461at 180.821 kb on + strand, within GFF461at 180.842 kb on + strand, within GFF461at 180.842 kb on + strand, within GFF461at 180.842 kb on + strand, within GFF461at 180.886 kb on + strand, within GFF461at 180.896 kb on + strand, within GFF461at 180.897 kb on - strand, within GFF461at 180.920 kb on + strand, within GFF461at 181.505 kb on + strand, within GFF461at 181.615 kb on + strand, within GFF461at 181.694 kb on - strand, within GFF461at 181.720 kb on + strand, within GFF461at 181.843 kb on + strand, within GFF461at 181.844 kb on - strand, within GFF461at 181.848 kb on - strand, within GFF461at 181.848 kb on - strand, within GFF461at 181.880 kb on + strand, within GFF461at 181.881 kb on - strand, within GFF461at 181.881 kb on - strand, within GFF461at 181.882 kb on + strand, within GFF461at 181.882 kb on + strand, within GFF461at 181.882 kb on + strand, within GFF461at 181.883 kb on - strand, within GFF461at 181.883 kb on - strand, within GFF461at 181.992 kb on - strand, within GFF461at 182.253 kb on - strand, within GFF461at 182.253 kb on - strand, within GFF461at 182.378 kb on - strand, within GFF461at 182.381 kb on + strand, within GFF461at 182.381 kb on + strand, within GFF461at 182.382 kb on - strand, within GFF461at 182.757 kb on - strandat 183.034 kb on - strand, within GFF462at 183.037 kb on + strand, within GFF462at 183.100 kb on + strand, within GFF462at 183.101 kb on - strand, within GFF462at 183.101 kb on - strand, within GFF462at 183.131 kb on + strandat 183.131 kb on + strandat 183.132 kb on - strandat 183.202 kb on - strandat 183.202 kb on - strandat 183.231 kb on + strand, within GFF463at 183.516 kb on + strand, within GFF463at 183.517 kb on - strand, within GFF463at 183.687 kb on + strandat 183.687 kb on + strandat 183.687 kb on + strandat 183.688 kb on - strandat 183.689 kb on + strandat 183.689 kb on + strandat 183.690 kb on - strandat 183.690 kb on - strandat 183.690 kb on - strandat 183.726 kb on + strandat 183.727 kb on - strandat 183.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
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179,446 + +0.2
179,504 - +1.2
179,511 + +1.2
179,566 - -3.4
179,606 + -1.6
179,611 + +0.4
179,611 + +0.4
179,657 + +2.0
179,657 + -0.6
179,936 + GFF459 0.49 +0.4
179,957 + GFF459 0.52 -0.2
179,957 + GFF459 0.52 -0.5
179,958 - GFF459 0.52 -1.6
179,958 - GFF459 0.52 -1.3
180,034 + GFF459 0.64 +2.1
180,034 + GFF459 0.64 -0.4
180,034 + GFF459 0.64 +0.6
180,034 + GFF459 0.64 -0.6
180,035 - GFF459 0.64 -0.5
180,035 - GFF459 0.64 +1.1
180,092 + GFF459 0.73 -0.2
180,174 - GFF459 0.85 +0.3
180,219 + -4.5
180,220 - +0.9
180,259 - -0.6
180,259 - +0.3
180,284 - +0.7
180,378 - GFF460 0.46 +0.5
180,583 + -5.5
180,614 - +0.2
180,652 - +1.2
180,652 - -1.9
180,737 + GFF461 0.13 +0.6
180,767 + GFF461 0.15 +0.5
180,789 + GFF461 0.16 +1.2
180,805 + GFF461 0.16 +0.4
180,821 + GFF461 0.17 -2.8
180,842 + GFF461 0.18 +0.9
180,842 + GFF461 0.18 +0.9
180,842 + GFF461 0.18 -0.5
180,886 + GFF461 0.20 +0.9
180,896 + GFF461 0.20 +0.7
180,897 - GFF461 0.20 -0.0
180,920 + GFF461 0.21 +1.0
181,505 + GFF461 0.46 +0.2
181,615 + GFF461 0.51 +1.0
181,694 - GFF461 0.54 +0.7
181,720 + GFF461 0.55 +1.4
181,843 + GFF461 0.61 +0.6
181,844 - GFF461 0.61 -0.2
181,848 - GFF461 0.61 +0.2
181,848 - GFF461 0.61 -1.0
181,880 + GFF461 0.62 +1.3
181,881 - GFF461 0.62 -2.4
181,881 - GFF461 0.62 +0.8
181,882 + GFF461 0.62 -1.0
181,882 + GFF461 0.62 +1.4
181,882 + GFF461 0.62 +0.5
181,883 - GFF461 0.62 -0.6
181,883 - GFF461 0.62 +0.6
181,992 - GFF461 0.67 -0.5
182,253 - GFF461 0.78 -0.1
182,253 - GFF461 0.78 +0.5
182,378 - GFF461 0.84 -0.2
182,381 + GFF461 0.84 +1.1
182,381 + GFF461 0.84 +0.6
182,382 - GFF461 0.84 -0.2
182,757 - +1.0
183,034 - GFF462 0.70 +1.2
183,037 + GFF462 0.70 -0.5
183,100 + GFF462 0.85 -0.3
183,101 - GFF462 0.85 -3.9
183,101 - GFF462 0.85 +1.7
183,131 + +1.6
183,131 + -0.1
183,132 - -1.9
183,202 - +0.9
183,202 - +0.5
183,231 + GFF463 0.15 -0.1
183,516 + GFF463 0.64 +0.1
183,517 - GFF463 0.64 +0.1
183,687 + -1.8
183,687 + +0.4
183,687 + -0.8
183,688 - +0.1
183,689 + +0.4
183,689 + -0.4
183,690 - +0.7
183,690 - +1.0
183,690 - -0.5
183,726 + -1.0
183,727 - +0.2
183,727 - -0.0

Or see this region's nucleotide sequence