Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4531

Experiment: 6H2_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4530 and GFF4531 are separated by 210 nucleotidesGFF4531 and GFF4532 are separated by 9 nucleotides GFF4530 - [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22), at 316,780 to 317,856 GFF4530 GFF4531 - FIG01046674: hypothetical protein, at 318,067 to 318,231 GFF4531 GFF4532 - Sensor kinase CitA, DpiB (EC 2.7.3.-), at 318,241 to 319,902 GFF4532 Position (kb) 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1at 317.178 kb on + strand, within GFF4530at 317.186 kb on + strand, within GFF4530at 317.212 kb on - strand, within GFF4530at 317.307 kb on + strand, within GFF4530at 317.308 kb on - strand, within GFF4530at 317.409 kb on + strand, within GFF4530at 317.410 kb on - strand, within GFF4530at 317.410 kb on - strand, within GFF4530at 317.410 kb on - strand, within GFF4530at 317.492 kb on - strand, within GFF4530at 317.556 kb on - strand, within GFF4530at 318.358 kb on + strandat 318.529 kb on + strand, within GFF4532at 318.641 kb on - strand, within GFF4532at 318.694 kb on - strand, within GFF4532at 318.751 kb on - strand, within GFF4532at 318.822 kb on - strand, within GFF4532at 318.925 kb on - strand, within GFF4532at 318.970 kb on - strand, within GFF4532

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Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
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317,178 + GFF4530 0.37 +0.1
317,186 + GFF4530 0.38 -0.6
317,212 - GFF4530 0.40 -0.6
317,307 + GFF4530 0.49 +0.9
317,308 - GFF4530 0.49 +0.1
317,409 + GFF4530 0.58 +0.2
317,410 - GFF4530 0.58 +1.2
317,410 - GFF4530 0.58 -2.9
317,410 - GFF4530 0.58 -1.7
317,492 - GFF4530 0.66 -0.1
317,556 - GFF4530 0.72 +0.6
318,358 + +0.5
318,529 + GFF4532 0.17 -0.7
318,641 - GFF4532 0.24 +1.2
318,694 - GFF4532 0.27 +0.8
318,751 - GFF4532 0.31 -0.0
318,822 - GFF4532 0.35 -1.4
318,925 - GFF4532 0.41 -1.2
318,970 - GFF4532 0.44 -0.2

Or see this region's nucleotide sequence