Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3780

Experiment: 6H2_phage 10 MOI; agar plate assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3779 and GFF3780 are separated by 43 nucleotidesGFF3780 and GFF3781 are separated by 32 nucleotides GFF3779 - Colicin I receptor precursor, at 46,348 to 48,300 GFF3779 GFF3780 - Hexose phosphate uptake regulatory protein UhpC, at 48,344 to 49,666 GFF3780 GFF3781 - Phosphoserine phosphatase (EC 3.1.3.3), at 49,699 to 50,586 GFF3781 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 47.458 kb on - strand, within GFF3779at 47.585 kb on + strand, within GFF3779at 47.709 kb on - strand, within GFF3779at 47.869 kb on + strand, within GFF3779at 47.869 kb on + strand, within GFF3779at 47.870 kb on - strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.961 kb on + strand, within GFF3779at 48.076 kb on + strand, within GFF3779at 48.091 kb on + strand, within GFF3779at 48.251 kb on - strandat 48.347 kb on + strandat 48.411 kb on + strandat 48.412 kb on - strandat 48.415 kb on + strandat 48.416 kb on - strandat 48.417 kb on + strandat 48.579 kb on + strand, within GFF3780at 48.624 kb on + strand, within GFF3780at 48.663 kb on - strand, within GFF3780at 48.663 kb on - strand, within GFF3780at 48.733 kb on - strand, within GFF3780at 48.797 kb on + strand, within GFF3780at 48.889 kb on + strand, within GFF3780at 48.920 kb on - strand, within GFF3780at 48.921 kb on + strand, within GFF3780at 48.922 kb on - strand, within GFF3780at 49.022 kb on + strand, within GFF3780at 49.028 kb on - strand, within GFF3780at 49.028 kb on - strand, within GFF3780at 49.049 kb on - strand, within GFF3780at 49.049 kb on - strand, within GFF3780at 49.235 kb on - strand, within GFF3780at 49.453 kb on + strand, within GFF3780at 49.875 kb on + strand, within GFF3781at 50.099 kb on - strand, within GFF3781at 50.436 kb on + strand, within GFF3781

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
remove
47,458 - GFF3779 0.57 -1.1
47,585 + GFF3779 0.63 +0.3
47,709 - GFF3779 0.70 -0.3
47,869 + GFF3779 0.78 -1.3
47,869 + GFF3779 0.78 -2.7
47,870 - GFF3779 0.78 +0.0
47,959 + GFF3779 0.82 +0.2
47,959 + GFF3779 0.82 +0.2
47,959 + GFF3779 0.82 +1.9
47,960 - GFF3779 0.83 -0.6
47,960 - GFF3779 0.83 -0.6
47,960 - GFF3779 0.83 +0.9
47,961 + GFF3779 0.83 +1.4
48,076 + GFF3779 0.88 +1.0
48,091 + GFF3779 0.89 -0.4
48,251 - +0.4
48,347 + +0.7
48,411 + +0.4
48,412 - -3.1
48,415 + -0.2
48,416 - -1.9
48,417 + -0.1
48,579 + GFF3780 0.18 +0.2
48,624 + GFF3780 0.21 -0.5
48,663 - GFF3780 0.24 +0.0
48,663 - GFF3780 0.24 -2.3
48,733 - GFF3780 0.29 +0.0
48,797 + GFF3780 0.34 +0.8
48,889 + GFF3780 0.41 +0.9
48,920 - GFF3780 0.44 -0.5
48,921 + GFF3780 0.44 +0.6
48,922 - GFF3780 0.44 +0.6
49,022 + GFF3780 0.51 +1.5
49,028 - GFF3780 0.52 -0.0
49,028 - GFF3780 0.52 -0.5
49,049 - GFF3780 0.53 +0.1
49,049 - GFF3780 0.53 -1.7
49,235 - GFF3780 0.67 +0.5
49,453 + GFF3780 0.84 -0.1
49,875 + GFF3781 0.20 -2.4
50,099 - GFF3781 0.45 -2.8
50,436 + GFF3781 0.83 +0.5

Or see this region's nucleotide sequence