Experiment: 6H2_phage 10 MOI; agar plate assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2838 and GFF2839 are separated by 804 nucleotides GFF2839 and GFF2840 are separated by 70 nucleotides GFF2840 and GFF2841 are separated by 157 nucleotides GFF2841 and GFF2842 are separated by 211 nucleotides
GFF2838 - Cold shock protein CspC, at 360,819 to 361,028
GFF2838
GFF2839 - FIG00638740: hypothetical protein, at 361,833 to 362,120
GFF2839
GFF2840 - Putative inner membrane protein, at 362,191 to 362,334
GFF2840
GFF2841 - putative exported protein, at 362,492 to 362,731
GFF2841
GFF2842 - Transcriptional regulator KdgR, KDG operon repressor, at 362,943 to 363,734
GFF2842
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 360.937 kb on - strand, within GFF2838 at 361.017 kb on - strand at 361.107 kb on - strand at 361.110 kb on - strand at 361.197 kb on - strand at 361.643 kb on + strand at 361.692 kb on - strand at 361.696 kb on - strand at 361.724 kb on + strand at 361.747 kb on + strand at 361.747 kb on + strand at 361.750 kb on + strand at 361.993 kb on - strand, within GFF2839 at 362.071 kb on - strand, within GFF2839 at 362.184 kb on - strand at 362.294 kb on - strand, within GFF2840 at 362.411 kb on - strand at 362.411 kb on - strand at 362.412 kb on + strand at 362.450 kb on - strand at 362.468 kb on - strand at 362.578 kb on + strand, within GFF2841 at 362.740 kb on - strand at 362.769 kb on + strand at 362.880 kb on + strand at 362.945 kb on - strand at 362.954 kb on - strand at 363.014 kb on - strand at 363.110 kb on + strand, within GFF2842 at 363.118 kb on - strand, within GFF2842 at 363.118 kb on - strand, within GFF2842
Per-strain Table
Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay remove 360,937 - GFF2838 0.56 +0.5 361,017 - +1.3 361,107 - -0.4 361,110 - +0.7 361,197 - +2.1 361,643 + +1.0 361,692 - +0.1 361,696 - -0.4 361,724 + +0.5 361,747 + +0.5 361,747 + -1.5 361,750 + +0.9 361,993 - GFF2839 0.56 +0.0 362,071 - GFF2839 0.83 +1.3 362,184 - -1.2 362,294 - GFF2840 0.72 +0.0 362,411 - -0.6 362,411 - -0.3 362,412 + +0.9 362,450 - -1.1 362,468 - +0.5 362,578 + GFF2841 0.36 +0.1 362,740 - -2.9 362,769 + -0.5 362,880 + +0.7 362,945 - +0.6 362,954 - -0.1 363,014 - +0.3 363,110 + GFF2842 0.21 -1.3 363,118 - GFF2842 0.22 +0.9 363,118 - GFF2842 0.22 +0.0
Or see this region's nucleotide sequence