Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF275

Experiment: 6H2_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF274 and GFF275 overlap by 1 nucleotidesGFF275 and GFF276 are separated by 38 nucleotides GFF274 - Xaa-Pro dipeptidase PepQ (EC 3.4.13.9), at 50,523 to 51,854 GFF274 GFF275 - FIG000605: protein co-occurring with transport systems (COG1739), at 51,854 to 52,468 GFF275 GFF276 - Potassium uptake protein TrkH, at 52,507 to 53,958 GFF276 Position (kb) 51 52 53Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 50.982 kb on + strand, within GFF274at 50.983 kb on - strand, within GFF274at 50.991 kb on + strand, within GFF274at 50.991 kb on + strand, within GFF274at 50.992 kb on - strand, within GFF274at 51.162 kb on + strand, within GFF274at 51.207 kb on + strand, within GFF274at 51.354 kb on - strand, within GFF274at 51.412 kb on - strand, within GFF274at 51.557 kb on - strand, within GFF274at 51.557 kb on - strand, within GFF274at 51.619 kb on - strand, within GFF274at 51.684 kb on + strand, within GFF274at 51.685 kb on - strand, within GFF274at 51.685 kb on - strand, within GFF274at 51.794 kb on + strandat 51.853 kb on - strandat 51.922 kb on + strand, within GFF275at 51.923 kb on - strand, within GFF275at 51.928 kb on - strand, within GFF275at 51.948 kb on + strand, within GFF275at 51.949 kb on - strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.160 kb on + strand, within GFF275at 52.161 kb on - strand, within GFF275at 52.161 kb on - strand, within GFF275at 52.161 kb on - strand, within GFF275at 52.168 kb on + strand, within GFF275at 52.202 kb on + strand, within GFF275at 52.228 kb on - strand, within GFF275at 52.271 kb on - strand, within GFF275at 52.271 kb on - strand, within GFF275at 52.287 kb on - strand, within GFF275at 52.318 kb on - strand, within GFF275at 52.467 kb on - strandat 53.067 kb on + strand, within GFF276at 53.067 kb on + strand, within GFF276at 53.071 kb on + strand, within GFF276at 53.072 kb on - strand, within GFF276at 53.072 kb on - strand, within GFF276at 53.218 kb on - strand, within GFF276at 53.260 kb on - strand, within GFF276at 53.282 kb on + strand, within GFF276at 53.283 kb on - strand, within GFF276at 53.395 kb on - strand, within GFF276at 53.398 kb on + strand, within GFF276

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Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
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50,982 + GFF274 0.34 +0.5
50,983 - GFF274 0.35 +1.2
50,991 + GFF274 0.35 -1.4
50,991 + GFF274 0.35 -0.3
50,992 - GFF274 0.35 -0.3
51,162 + GFF274 0.48 +0.8
51,207 + GFF274 0.51 -1.1
51,354 - GFF274 0.62 +0.9
51,412 - GFF274 0.67 -1.1
51,557 - GFF274 0.78 +0.9
51,557 - GFF274 0.78 -1.1
51,619 - GFF274 0.82 +0.4
51,684 + GFF274 0.87 -1.2
51,685 - GFF274 0.87 -0.8
51,685 - GFF274 0.87 +0.4
51,794 + +0.7
51,853 - -0.8
51,922 + GFF275 0.11 +0.4
51,923 - GFF275 0.11 -0.3
51,928 - GFF275 0.12 -1.4
51,948 + GFF275 0.15 +0.0
51,949 - GFF275 0.15 +0.1
52,160 + GFF275 0.50 -2.2
52,160 + GFF275 0.50 -4.2
52,160 + GFF275 0.50 +1.1
52,160 + GFF275 0.50 +0.3
52,160 + GFF275 0.50 -0.2
52,161 - GFF275 0.50 +0.4
52,161 - GFF275 0.50 +1.0
52,161 - GFF275 0.50 -0.0
52,168 + GFF275 0.51 +0.7
52,202 + GFF275 0.57 -2.8
52,228 - GFF275 0.61 -0.1
52,271 - GFF275 0.68 +0.6
52,271 - GFF275 0.68 +0.7
52,287 - GFF275 0.70 -3.1
52,318 - GFF275 0.75 -1.4
52,467 - -3.8
53,067 + GFF276 0.39 -3.0
53,067 + GFF276 0.39 -1.2
53,071 + GFF276 0.39 -1.9
53,072 - GFF276 0.39 +0.9
53,072 - GFF276 0.39 -1.4
53,218 - GFF276 0.49 -1.5
53,260 - GFF276 0.52 -0.5
53,282 + GFF276 0.53 -1.5
53,283 - GFF276 0.53 -2.5
53,395 - GFF276 0.61 -0.9
53,398 + GFF276 0.61 -1.8

Or see this region's nucleotide sequence