Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2228

Experiment: 6H2_phage 10 MOI; agar plate assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2226 and GFF2227 are separated by 1 nucleotidesGFF2227 and GFF2228 overlap by 8 nucleotidesGFF2228 and GFF2229 are separated by 51 nucleotides GFF2226 - Hypothetical radical SAM family enzyme in interesting gene cluster, at 19,780 to 21,021 GFF2226 GFF2227 - FIG01124638: hypothetical protein, at 21,023 to 21,898 GFF2227 GFF2228 - FIG00638667: hypothetical protein, at 21,891 to 22,877 GFF2228 GFF2229 - FIG074102: hypothetical protein, at 22,929 to 23,777 GFF2229 Position (kb) 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 20.895 kb on - strand, within GFF2226at 20.895 kb on - strand, within GFF2226at 20.973 kb on + strandat 20.992 kb on - strandat 20.994 kb on - strandat 21.015 kb on + strandat 21.022 kb on - strandat 21.054 kb on + strandat 21.096 kb on + strandat 21.096 kb on + strandat 21.207 kb on + strand, within GFF2227at 21.207 kb on + strand, within GFF2227at 21.208 kb on - strand, within GFF2227at 21.303 kb on + strand, within GFF2227at 21.304 kb on - strand, within GFF2227at 21.388 kb on + strand, within GFF2227at 21.485 kb on - strand, within GFF2227at 21.625 kb on + strand, within GFF2227at 21.712 kb on - strand, within GFF2227at 21.787 kb on + strand, within GFF2227at 21.812 kb on - strandat 22.016 kb on + strand, within GFF2228at 22.111 kb on - strand, within GFF2228at 22.132 kb on + strand, within GFF2228at 22.153 kb on - strand, within GFF2228at 22.153 kb on - strand, within GFF2228at 22.305 kb on - strand, within GFF2228at 22.390 kb on + strand, within GFF2228at 22.678 kb on + strand, within GFF2228at 22.678 kb on + strand, within GFF2228at 22.678 kb on + strand, within GFF2228at 22.698 kb on + strand, within GFF2228at 22.726 kb on - strand, within GFF2228at 22.813 kb on - strandat 22.939 kb on + strandat 22.940 kb on - strandat 22.954 kb on + strandat 22.954 kb on + strandat 22.955 kb on - strandat 22.959 kb on - strandat 22.969 kb on + strandat 23.099 kb on + strand, within GFF2229at 23.100 kb on - strand, within GFF2229at 23.162 kb on + strand, within GFF2229at 23.178 kb on - strand, within GFF2229at 23.181 kb on - strand, within GFF2229at 23.379 kb on + strand, within GFF2229at 23.385 kb on - strand, within GFF2229at 23.436 kb on + strand, within GFF2229at 23.437 kb on - strand, within GFF2229at 23.437 kb on - strand, within GFF2229at 23.619 kb on - strand, within GFF2229at 23.624 kb on + strand, within GFF2229at 23.624 kb on + strand, within GFF2229at 23.627 kb on + strand, within GFF2229at 23.627 kb on + strand, within GFF2229at 23.667 kb on - strand, within GFF2229at 23.760 kb on - strandat 23.805 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
remove
20,895 - GFF2226 0.90 -0.8
20,895 - GFF2226 0.90 +0.3
20,973 + +1.1
20,992 - -0.5
20,994 - -3.7
21,015 + -1.0
21,022 - +0.3
21,054 + +1.3
21,096 + +0.9
21,096 + +0.7
21,207 + GFF2227 0.21 -0.4
21,207 + GFF2227 0.21 -0.4
21,208 - GFF2227 0.21 -1.8
21,303 + GFF2227 0.32 +0.1
21,304 - GFF2227 0.32 +0.4
21,388 + GFF2227 0.42 -0.4
21,485 - GFF2227 0.53 -1.2
21,625 + GFF2227 0.69 -0.0
21,712 - GFF2227 0.79 +0.0
21,787 + GFF2227 0.87 -0.5
21,812 - +1.0
22,016 + GFF2228 0.13 +0.4
22,111 - GFF2228 0.22 +0.1
22,132 + GFF2228 0.24 -0.5
22,153 - GFF2228 0.27 +0.0
22,153 - GFF2228 0.27 +0.4
22,305 - GFF2228 0.42 +0.3
22,390 + GFF2228 0.51 -0.7
22,678 + GFF2228 0.80 -0.2
22,678 + GFF2228 0.80 -3.7
22,678 + GFF2228 0.80 +0.4
22,698 + GFF2228 0.82 +0.1
22,726 - GFF2228 0.85 -3.5
22,813 - -3.4
22,939 + +1.8
22,940 - -0.7
22,954 + +1.2
22,954 + -2.7
22,955 - +0.4
22,959 - +0.0
22,969 + +1.4
23,099 + GFF2229 0.20 -0.0
23,100 - GFF2229 0.20 -3.4
23,162 + GFF2229 0.27 -1.6
23,178 - GFF2229 0.29 -0.1
23,181 - GFF2229 0.30 -0.0
23,379 + GFF2229 0.53 -0.3
23,385 - GFF2229 0.54 -0.9
23,436 + GFF2229 0.60 +0.3
23,437 - GFF2229 0.60 +0.7
23,437 - GFF2229 0.60 +1.0
23,619 - GFF2229 0.81 +0.8
23,624 + GFF2229 0.82 +1.3
23,624 + GFF2229 0.82 +0.3
23,627 + GFF2229 0.82 -2.3
23,627 + GFF2229 0.82 +0.5
23,667 - GFF2229 0.87 +0.8
23,760 - -0.4
23,805 - +0.6

Or see this region's nucleotide sequence