Experiment: 6H2_phage 10 MOI; agar plate assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2037 and GFF2038 are separated by 61 nucleotides GFF2038 and GFF2039 are separated by 89 nucleotides
GFF2037 - Putative exported protein precursor, at 3,966 to 4,727
GFF2037
GFF2038 - LysR family transcriptional regulator YfeR, at 4,789 to 5,715
GFF2038
GFF2039 - Putative cytochrome oxidase, at 5,805 to 6,803
GFF2039
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.066 kb on - strand, within GFF2037 at 4.289 kb on - strand, within GFF2037 at 4.318 kb on - strand, within GFF2037 at 4.338 kb on - strand, within GFF2037 at 4.369 kb on + strand, within GFF2037 at 4.377 kb on - strand, within GFF2037 at 4.427 kb on + strand, within GFF2037 at 4.443 kb on + strand, within GFF2037 at 4.462 kb on - strand, within GFF2037 at 4.462 kb on - strand, within GFF2037 at 4.466 kb on - strand, within GFF2037 at 4.468 kb on + strand, within GFF2037 at 4.488 kb on - strand, within GFF2037 at 4.536 kb on + strand, within GFF2037 at 4.560 kb on + strand, within GFF2037 at 4.700 kb on + strand at 4.782 kb on + strand at 4.786 kb on + strand at 4.790 kb on + strand at 4.791 kb on - strand at 4.793 kb on - strand at 4.951 kb on + strand, within GFF2038 at 4.951 kb on + strand, within GFF2038 at 5.123 kb on + strand, within GFF2038 at 5.213 kb on - strand, within GFF2038 at 5.394 kb on + strand, within GFF2038 at 5.602 kb on + strand, within GFF2038 at 5.603 kb on - strand, within GFF2038 at 5.607 kb on + strand, within GFF2038 at 5.688 kb on + strand at 5.847 kb on - strand at 6.122 kb on + strand, within GFF2039 at 6.257 kb on - strand, within GFF2039 at 6.264 kb on - strand, within GFF2039 at 6.593 kb on + strand, within GFF2039 at 6.682 kb on + strand, within GFF2039 at 6.683 kb on - strand, within GFF2039
Per-strain Table
Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay remove 4,066 - GFF2037 0.13 -0.8 4,289 - GFF2037 0.42 -0.6 4,318 - GFF2037 0.46 -0.7 4,338 - GFF2037 0.49 -0.1 4,369 + GFF2037 0.53 +0.7 4,377 - GFF2037 0.54 -1.0 4,427 + GFF2037 0.60 +0.8 4,443 + GFF2037 0.63 +0.6 4,462 - GFF2037 0.65 +0.3 4,462 - GFF2037 0.65 -3.2 4,466 - GFF2037 0.66 -0.3 4,468 + GFF2037 0.66 +1.0 4,488 - GFF2037 0.69 +1.4 4,536 + GFF2037 0.75 +0.6 4,560 + GFF2037 0.78 -1.7 4,700 + +0.3 4,782 + +0.7 4,786 + -1.5 4,790 + +1.0 4,791 - -0.3 4,793 - -1.0 4,951 + GFF2038 0.17 +0.3 4,951 + GFF2038 0.17 +0.3 5,123 + GFF2038 0.36 +0.6 5,213 - GFF2038 0.46 +0.9 5,394 + GFF2038 0.65 -0.5 5,602 + GFF2038 0.88 +1.7 5,603 - GFF2038 0.88 +0.6 5,607 + GFF2038 0.88 +0.0 5,688 + +1.6 5,847 - -0.6 6,122 + GFF2039 0.32 +0.4 6,257 - GFF2039 0.45 -0.2 6,264 - GFF2039 0.46 +2.5 6,593 + GFF2039 0.79 +0.6 6,682 + GFF2039 0.88 -3.4 6,683 - GFF2039 0.88 +0.1
Or see this region's nucleotide sequence