Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF201

Experiment: 6H2_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF200 and GFF201 are separated by 80 nucleotidesGFF201 and GFF202 overlap by 4 nucleotides GFF200 - Putative metabolite transport protein yaaU, at 195,572 to 196,978 GFF200 GFF201 - Ferredoxin-like protein FixX, at 197,059 to 197,346 GFF201 GFF202 - Probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-), at 197,343 to 198,629 GFF202 Position (kb) 197 198Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 196.124 kb on - strand, within GFF200at 196.125 kb on + strand, within GFF200at 196.126 kb on - strand, within GFF200at 196.543 kb on - strand, within GFF200at 196.556 kb on - strand, within GFF200at 196.883 kb on - strandat 197.057 kb on + strandat 197.204 kb on + strand, within GFF201at 197.349 kb on + strandat 197.708 kb on + strand, within GFF202at 197.740 kb on - strand, within GFF202at 197.769 kb on - strand, within GFF202at 197.769 kb on - strand, within GFF202at 197.769 kb on - strand, within GFF202at 197.804 kb on - strand, within GFF202at 198.024 kb on + strand, within GFF202at 198.312 kb on + strand, within GFF202at 198.313 kb on - strand, within GFF202

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Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
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196,124 - GFF200 0.39 +0.0
196,125 + GFF200 0.39 +0.7
196,126 - GFF200 0.39 -4.9
196,543 - GFF200 0.69 -2.1
196,556 - GFF200 0.70 +1.0
196,883 - +0.7
197,057 + +0.6
197,204 + GFF201 0.50 +0.8
197,349 + -1.0
197,708 + GFF202 0.28 -3.3
197,740 - GFF202 0.31 +0.4
197,769 - GFF202 0.33 -0.6
197,769 - GFF202 0.33 +0.5
197,769 - GFF202 0.33 -0.2
197,804 - GFF202 0.36 -0.5
198,024 + GFF202 0.53 +0.8
198,312 + GFF202 0.75 +0.8
198,313 - GFF202 0.75 +0.4

Or see this region's nucleotide sequence