Experiment: 6H2_phage 10 MOI; agar plate assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1893 and GFF1894 are separated by 931 nucleotides GFF1894 and GFF1895 are separated by 93 nucleotides GFF1895 and GFF1896 are separated by 91 nucleotides
GFF1893 - LysR family transcriptional regulator lrhA, at 86,518 to 87,453
GFF1893
GFF1894 - Aspartate aminotransferase (EC 2.6.1.1), at 88,385 to 89,599
GFF1894
GFF1895 - Nucleotidase YfbR, HD superfamily, at 89,693 to 90,292
GFF1895
GFF1896 - Putative transport protein, at 90,384 to 92,210
GFF1896
Position (kb) 88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 87.531 kb on + strand at 87.827 kb on - strand at 88.481 kb on - strand at 88.607 kb on + strand, within GFF1894 at 88.608 kb on - strand, within GFF1894 at 88.675 kb on + strand, within GFF1894 at 88.680 kb on - strand, within GFF1894 at 88.680 kb on - strand, within GFF1894 at 88.680 kb on - strand, within GFF1894 at 88.821 kb on - strand, within GFF1894 at 88.889 kb on - strand, within GFF1894 at 89.102 kb on - strand, within GFF1894 at 89.239 kb on + strand, within GFF1894 at 89.261 kb on + strand, within GFF1894 at 89.303 kb on + strand, within GFF1894 at 89.381 kb on + strand, within GFF1894 at 89.381 kb on + strand, within GFF1894 at 89.381 kb on + strand, within GFF1894 at 89.382 kb on - strand, within GFF1894 at 89.382 kb on - strand, within GFF1894 at 89.382 kb on - strand, within GFF1894 at 89.792 kb on - strand, within GFF1895 at 89.792 kb on - strand, within GFF1895 at 89.891 kb on + strand, within GFF1895 at 89.892 kb on - strand, within GFF1895 at 89.911 kb on - strand, within GFF1895 at 89.911 kb on - strand, within GFF1895 at 89.969 kb on + strand, within GFF1895 at 90.049 kb on + strand, within GFF1895 at 90.221 kb on + strand, within GFF1895 at 90.226 kb on + strand, within GFF1895 at 90.479 kb on - strand at 90.479 kb on - strand at 90.531 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay remove 87,531 + +1.2 87,827 - -1.0 88,481 - -0.6 88,607 + GFF1894 0.18 +0.3 88,608 - GFF1894 0.18 -0.2 88,675 + GFF1894 0.24 +0.3 88,680 - GFF1894 0.24 -0.3 88,680 - GFF1894 0.24 +0.1 88,680 - GFF1894 0.24 +0.8 88,821 - GFF1894 0.36 -2.9 88,889 - GFF1894 0.41 -0.5 89,102 - GFF1894 0.59 -1.9 89,239 + GFF1894 0.70 -2.1 89,261 + GFF1894 0.72 -0.1 89,303 + GFF1894 0.76 +0.2 89,381 + GFF1894 0.82 -0.4 89,381 + GFF1894 0.82 +0.6 89,381 + GFF1894 0.82 +0.8 89,382 - GFF1894 0.82 +0.4 89,382 - GFF1894 0.82 -2.7 89,382 - GFF1894 0.82 -0.0 89,792 - GFF1895 0.17 +0.3 89,792 - GFF1895 0.17 +0.3 89,891 + GFF1895 0.33 -0.0 89,892 - GFF1895 0.33 +0.6 89,911 - GFF1895 0.36 +0.2 89,911 - GFF1895 0.36 -0.5 89,969 + GFF1895 0.46 -1.6 90,049 + GFF1895 0.59 +0.6 90,221 + GFF1895 0.88 -0.2 90,226 + GFF1895 0.89 +0.4 90,479 - +0.1 90,479 - +0.9 90,531 - -0.4
Or see this region's nucleotide sequence