Experiment: 6H2_phage 10 MOI; agar plate assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1712 and GFF1713 are separated by 4 nucleotides GFF1713 and GFF1714 are separated by 150 nucleotides GFF1714 and GFF1715 are separated by 89 nucleotides
GFF1712 - FIG00637882: hypothetical protein, at 12,083 to 13,534
GFF1712
GFF1713 - Aspartate--ammonia ligase (EC 6.3.1.1), at 13,539 to 14,531
GFF1713
GFF1714 - Regulatory protein AsnC, at 14,682 to 15,140
GFF1714
GFF1715 - Flavoprotein MioC, at 15,230 to 15,673
GFF1715
Position (kb) 13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 12.613 kb on + strand, within GFF1712 at 12.638 kb on - strand, within GFF1712 at 12.655 kb on + strand, within GFF1712 at 12.669 kb on - strand, within GFF1712 at 12.718 kb on - strand, within GFF1712 at 12.862 kb on + strand, within GFF1712 at 12.863 kb on - strand, within GFF1712 at 13.049 kb on - strand, within GFF1712 at 13.049 kb on - strand, within GFF1712 at 13.063 kb on + strand, within GFF1712 at 13.087 kb on + strand, within GFF1712 at 13.087 kb on + strand, within GFF1712 at 13.159 kb on + strand, within GFF1712 at 13.163 kb on - strand, within GFF1712 at 13.478 kb on - strand at 13.604 kb on + strand at 13.605 kb on - strand at 13.879 kb on + strand, within GFF1713 at 13.879 kb on + strand, within GFF1713 at 13.880 kb on - strand, within GFF1713 at 14.076 kb on - strand, within GFF1713 at 14.099 kb on + strand, within GFF1713 at 14.114 kb on + strand, within GFF1713 at 14.195 kb on - strand, within GFF1713 at 14.254 kb on + strand, within GFF1713 at 14.393 kb on + strand, within GFF1713 at 14.393 kb on + strand, within GFF1713 at 14.403 kb on - strand, within GFF1713 at 14.563 kb on + strand at 14.877 kb on + strand, within GFF1714 at 14.980 kb on - strand, within GFF1714 at 15.005 kb on + strand, within GFF1714 at 15.047 kb on - strand, within GFF1714 at 15.197 kb on - strand at 15.241 kb on + strand at 15.241 kb on + strand at 15.242 kb on - strand at 15.242 kb on - strand at 15.351 kb on + strand, within GFF1715 at 15.477 kb on + strand, within GFF1715 at 15.513 kb on - strand, within GFF1715 at 15.513 kb on - strand, within GFF1715
Per-strain Table
Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay remove 12,613 + GFF1712 0.37 -0.1 12,638 - GFF1712 0.38 +0.4 12,655 + GFF1712 0.39 +0.5 12,669 - GFF1712 0.40 +0.2 12,718 - GFF1712 0.44 +0.3 12,862 + GFF1712 0.54 +0.9 12,863 - GFF1712 0.54 -0.3 13,049 - GFF1712 0.67 +0.1 13,049 - GFF1712 0.67 -1.4 13,063 + GFF1712 0.67 +0.2 13,087 + GFF1712 0.69 +1.2 13,087 + GFF1712 0.69 -0.7 13,159 + GFF1712 0.74 +0.3 13,163 - GFF1712 0.74 +0.0 13,478 - -1.2 13,604 + -2.9 13,605 - +1.5 13,879 + GFF1713 0.34 +0.8 13,879 + GFF1713 0.34 +1.2 13,880 - GFF1713 0.34 -2.6 14,076 - GFF1713 0.54 +0.4 14,099 + GFF1713 0.56 +0.5 14,114 + GFF1713 0.58 +1.1 14,195 - GFF1713 0.66 -0.4 14,254 + GFF1713 0.72 +0.8 14,393 + GFF1713 0.86 +1.3 14,393 + GFF1713 0.86 +0.8 14,403 - GFF1713 0.87 +0.3 14,563 + -0.8 14,877 + GFF1714 0.42 -1.8 14,980 - GFF1714 0.65 -0.9 15,005 + GFF1714 0.70 +1.3 15,047 - GFF1714 0.80 -4.4 15,197 - -0.7 15,241 + +3.3 15,241 + -2.3 15,242 - +0.4 15,242 - -3.0 15,351 + GFF1715 0.27 +0.1 15,477 + GFF1715 0.56 +1.7 15,513 - GFF1715 0.64 -0.4 15,513 - GFF1715 0.64 -1.8
Or see this region's nucleotide sequence