Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1267

Experiment: 6H2_phage 10 MOI; agar plate assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1265 and GFF1266 are separated by 71 nucleotidesGFF1266 and GFF1267 overlap by 20 nucleotidesGFF1267 and GFF1268 are separated by 290 nucleotidesGFF1268 and GFF1269 are separated by 66 nucleotides GFF1265 - FIG01046678: hypothetical protein, at 90,660 to 91,073 GFF1265 GFF1266 - FIG00638373: hypothetical protein, at 91,145 to 91,909 GFF1266 GFF1267 - FIG01047435: hypothetical protein, at 91,890 to 92,114 GFF1267 GFF1268 - Putative antirestriction protein, at 92,405 to 92,839 GFF1268 GFF1269 - FIG074102: hypothetical protein, at 92,906 to 93,340 GFF1269 Position (kb) 91 92 93Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 90.997 kb on + strand, within GFF1265at 90.997 kb on + strand, within GFF1265at 90.997 kb on + strand, within GFF1265at 90.997 kb on + strand, within GFF1265at 90.998 kb on - strand, within GFF1265at 90.998 kb on - strand, within GFF1265at 91.105 kb on + strandat 91.162 kb on + strandat 91.171 kb on - strandat 91.186 kb on + strandat 91.331 kb on - strand, within GFF1266at 91.331 kb on - strand, within GFF1266at 91.562 kb on - strand, within GFF1266at 91.652 kb on + strand, within GFF1266at 91.652 kb on + strand, within GFF1266at 91.663 kb on + strand, within GFF1266at 91.663 kb on + strand, within GFF1266at 91.722 kb on + strand, within GFF1266at 91.911 kb on + strandat 91.912 kb on - strandat 91.933 kb on - strand, within GFF1267at 92.161 kb on - strandat 92.386 kb on - strandat 92.404 kb on + strandat 92.405 kb on - strandat 92.405 kb on - strandat 92.405 kb on - strandat 92.437 kb on + strandat 92.440 kb on + strandat 92.512 kb on - strand, within GFF1268at 92.512 kb on - strand, within GFF1268at 92.517 kb on + strand, within GFF1268at 92.517 kb on + strand, within GFF1268at 92.517 kb on + strand, within GFF1268at 92.517 kb on + strand, within GFF1268at 92.517 kb on + strand, within GFF1268at 92.517 kb on + strand, within GFF1268at 92.518 kb on - strand, within GFF1268at 92.518 kb on - strand, within GFF1268at 92.518 kb on - strand, within GFF1268at 92.518 kb on - strand, within GFF1268at 92.518 kb on - strand, within GFF1268at 92.520 kb on - strand, within GFF1268at 92.520 kb on - strand, within GFF1268at 92.520 kb on - strand, within GFF1268at 92.549 kb on + strand, within GFF1268at 92.549 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.759 kb on + strand, within GFF1268at 92.761 kb on + strand, within GFF1268at 92.761 kb on + strand, within GFF1268at 92.762 kb on - strand, within GFF1268at 92.762 kb on - strand, within GFF1268at 92.794 kb on + strand, within GFF1268at 92.795 kb on - strand, within GFF1268at 92.795 kb on - strand, within GFF1268at 92.819 kb on - strandat 92.872 kb on + strandat 92.906 kb on - strandat 92.906 kb on - strandat 92.910 kb on - strandat 93.042 kb on + strand, within GFF1269at 93.042 kb on + strand, within GFF1269at 93.101 kb on - strand, within GFF1269at 93.101 kb on - strand, within GFF1269

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
remove
90,997 + GFF1265 0.81 +1.1
90,997 + GFF1265 0.81 -0.1
90,997 + GFF1265 0.81 -0.4
90,997 + GFF1265 0.81 +0.0
90,998 - GFF1265 0.82 -4.9
90,998 - GFF1265 0.82 -3.1
91,105 + +0.1
91,162 + +2.0
91,171 - +0.5
91,186 + +0.4
91,331 - GFF1266 0.24 +0.4
91,331 - GFF1266 0.24 +0.2
91,562 - GFF1266 0.55 -4.4
91,652 + GFF1266 0.66 -0.1
91,652 + GFF1266 0.66 -0.1
91,663 + GFF1266 0.68 -0.1
91,663 + GFF1266 0.68 -4.2
91,722 + GFF1266 0.75 +1.3
91,911 + -0.9
91,912 - -2.1
91,933 - GFF1267 0.19 +0.8
92,161 - -0.7
92,386 - +0.3
92,404 + -1.8
92,405 - +0.7
92,405 - +0.1
92,405 - -0.1
92,437 + -0.7
92,440 + -1.1
92,512 - GFF1268 0.25 +0.6
92,512 - GFF1268 0.25 +0.5
92,517 + GFF1268 0.26 +1.9
92,517 + GFF1268 0.26 +0.5
92,517 + GFF1268 0.26 +0.7
92,517 + GFF1268 0.26 +0.6
92,517 + GFF1268 0.26 -0.2
92,517 + GFF1268 0.26 +0.2
92,518 - GFF1268 0.26 -1.7
92,518 - GFF1268 0.26 -0.3
92,518 - GFF1268 0.26 -0.4
92,518 - GFF1268 0.26 -0.7
92,518 - GFF1268 0.26 +0.3
92,520 - GFF1268 0.26 +0.3
92,520 - GFF1268 0.26 +0.1
92,520 - GFF1268 0.26 -0.0
92,549 + GFF1268 0.33 +0.7
92,549 + GFF1268 0.33 +0.3
92,759 + GFF1268 0.81 +0.8
92,759 + GFF1268 0.81 +0.5
92,759 + GFF1268 0.81 +0.7
92,759 + GFF1268 0.81 -2.7
92,759 + GFF1268 0.81 +0.1
92,761 + GFF1268 0.82 -1.4
92,761 + GFF1268 0.82 -0.2
92,762 - GFF1268 0.82 -0.7
92,762 - GFF1268 0.82 +1.1
92,794 + GFF1268 0.89 +0.0
92,795 - GFF1268 0.90 -0.9
92,795 - GFF1268 0.90 -0.5
92,819 - +0.4
92,872 + +1.0
92,906 - -0.7
92,906 - +0.0
92,910 - +0.5
93,042 + GFF1269 0.31 +0.5
93,042 + GFF1269 0.31 +0.3
93,101 - GFF1269 0.45 +0.1
93,101 - GFF1269 0.45 -1.8

Or see this region's nucleotide sequence