Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1069

Experiment: 6H2_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1068 and GFF1069 are separated by 57 nucleotidesGFF1069 and GFF1070 are separated by 40 nucleotidesGFF1070 and GFF1071 are separated by 17 nucleotides GFF1068 - Inner membrane protein CreD, at 249,756 to 251,105 GFF1068 GFF1069 - Putative major fimbrial subunit, at 251,163 to 252,248 GFF1069 GFF1070 - putative fimbrial subunit, at 252,289 to 252,846 GFF1070 GFF1071 - type 1 fimbriae anchoring protein FimD, at 252,864 to 255,293 GFF1071 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 250.182 kb on - strand, within GFF1068at 250.764 kb on + strand, within GFF1068at 250.764 kb on + strand, within GFF1068at 250.794 kb on - strand, within GFF1068at 250.855 kb on - strand, within GFF1068at 250.955 kb on + strand, within GFF1068at 250.956 kb on - strand, within GFF1068at 250.956 kb on - strand, within GFF1068at 251.089 kb on + strandat 251.165 kb on - strandat 251.168 kb on + strandat 251.168 kb on + strandat 251.170 kb on + strandat 251.170 kb on + strandat 251.170 kb on + strandat 251.171 kb on - strandat 251.171 kb on - strandat 251.171 kb on - strandat 251.171 kb on - strandat 251.182 kb on - strandat 251.267 kb on + strandat 251.403 kb on + strand, within GFF1069at 251.463 kb on - strand, within GFF1069at 251.510 kb on + strand, within GFF1069at 251.536 kb on - strand, within GFF1069at 251.664 kb on - strand, within GFF1069at 251.834 kb on + strand, within GFF1069at 251.835 kb on - strand, within GFF1069at 251.850 kb on - strand, within GFF1069at 251.854 kb on + strand, within GFF1069at 251.858 kb on + strand, within GFF1069at 251.859 kb on - strand, within GFF1069at 251.884 kb on + strand, within GFF1069at 251.991 kb on - strand, within GFF1069at 251.991 kb on - strand, within GFF1069at 252.016 kb on + strand, within GFF1069at 252.017 kb on - strand, within GFF1069at 252.018 kb on + strand, within GFF1069at 252.019 kb on - strand, within GFF1069at 252.019 kb on - strand, within GFF1069at 252.032 kb on + strand, within GFF1069at 252.032 kb on + strand, within GFF1069at 252.044 kb on + strand, within GFF1069at 252.170 kb on + strandat 252.193 kb on + strandat 252.194 kb on - strandat 252.198 kb on - strandat 252.209 kb on - strandat 252.236 kb on - strandat 252.236 kb on - strandat 252.357 kb on + strand, within GFF1070at 252.359 kb on + strand, within GFF1070at 252.359 kb on + strand, within GFF1070at 252.359 kb on + strand, within GFF1070at 252.359 kb on + strand, within GFF1070at 252.360 kb on - strand, within GFF1070at 252.420 kb on - strand, within GFF1070at 252.515 kb on + strand, within GFF1070at 252.550 kb on + strand, within GFF1070at 252.550 kb on + strand, within GFF1070at 252.666 kb on - strand, within GFF1070at 252.716 kb on + strand, within GFF1070at 252.721 kb on + strand, within GFF1070at 252.722 kb on - strand, within GFF1070at 252.761 kb on + strand, within GFF1070at 252.761 kb on + strand, within GFF1070at 252.841 kb on - strandat 252.851 kb on + strandat 252.882 kb on + strandat 252.918 kb on + strandat 252.920 kb on + strandat 252.920 kb on + strandat 253.140 kb on - strand, within GFF1071at 253.140 kb on - strand, within GFF1071at 253.191 kb on - strand, within GFF1071

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Per-strain Table

Position Strand Gene LocusTag Fraction 6H2_phage 10 MOI; agar plate assay
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250,182 - GFF1068 0.32 +0.2
250,764 + GFF1068 0.75 +1.3
250,764 + GFF1068 0.75 +0.8
250,794 - GFF1068 0.77 -2.5
250,855 - GFF1068 0.81 +1.5
250,955 + GFF1068 0.89 +0.4
250,956 - GFF1068 0.89 -3.3
250,956 - GFF1068 0.89 -2.5
251,089 + +0.4
251,165 - -0.4
251,168 + +0.2
251,168 + -0.4
251,170 + +0.3
251,170 + +0.6
251,170 + -0.8
251,171 - +0.8
251,171 - +3.5
251,171 - +0.5
251,171 - +0.1
251,182 - +0.7
251,267 + +0.4
251,403 + GFF1069 0.22 -2.9
251,463 - GFF1069 0.28 +0.9
251,510 + GFF1069 0.32 +2.8
251,536 - GFF1069 0.34 +1.2
251,664 - GFF1069 0.46 +0.3
251,834 + GFF1069 0.62 -0.9
251,835 - GFF1069 0.62 +1.0
251,850 - GFF1069 0.63 +0.9
251,854 + GFF1069 0.64 -0.9
251,858 + GFF1069 0.64 -0.3
251,859 - GFF1069 0.64 -0.8
251,884 + GFF1069 0.66 -0.2
251,991 - GFF1069 0.76 +0.7
251,991 - GFF1069 0.76 +0.6
252,016 + GFF1069 0.79 -0.9
252,017 - GFF1069 0.79 -1.7
252,018 + GFF1069 0.79 +0.1
252,019 - GFF1069 0.79 +0.3
252,019 - GFF1069 0.79 +0.3
252,032 + GFF1069 0.80 +0.6
252,032 + GFF1069 0.80 +2.2
252,044 + GFF1069 0.81 -1.0
252,170 + -1.5
252,193 + +0.3
252,194 - +1.7
252,198 - +0.5
252,209 - +1.2
252,236 - -0.6
252,236 - -0.1
252,357 + GFF1070 0.12 -2.5
252,359 + GFF1070 0.13 +0.5
252,359 + GFF1070 0.13 +0.6
252,359 + GFF1070 0.13 +0.6
252,359 + GFF1070 0.13 -2.6
252,360 - GFF1070 0.13 -0.4
252,420 - GFF1070 0.23 -0.1
252,515 + GFF1070 0.41 +1.2
252,550 + GFF1070 0.47 +0.7
252,550 + GFF1070 0.47 +1.0
252,666 - GFF1070 0.68 +0.5
252,716 + GFF1070 0.77 -0.6
252,721 + GFF1070 0.77 -0.2
252,722 - GFF1070 0.78 -0.2
252,761 + GFF1070 0.85 +0.1
252,761 + GFF1070 0.85 +0.1
252,841 - +1.1
252,851 + -0.1
252,882 + -0.2
252,918 + -0.5
252,920 + -0.1
252,920 + -0.7
253,140 - GFF1071 0.11 -2.9
253,140 - GFF1071 0.11 -1.3
253,191 - GFF1071 0.13 -1.1

Or see this region's nucleotide sequence