Experiment: LB_Tobacco_Leaf
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3691 and Atu3692 are separated by 351 nucleotides Atu3692 and Atu3693 are separated by 47 nucleotides Atu3693 and Atu3694 are separated by 125 nucleotides
Atu3691: Atu3691 - iron (III) dicitrate ABC transporter ATPase, at 766,319 to 767,122
Atu3691
Atu3692: Atu3692 - sigma factor, at 767,474 to 768,016
Atu3692
Atu3693: Atu3693 - two component sensor kinase, at 768,064 to 769,035
Atu3693
Atu3694: Atu3694 - penicillin binding protein, at 769,161 to 771,206
Atu3694
Position (kb) 768
769
770 Strain fitness (log2 ratio) -2
-1
0
1
2 at 767.086 kb on - strand at 767.097 kb on + strand at 767.115 kb on - strand at 767.115 kb on - strand at 767.116 kb on + strand at 767.386 kb on + strand at 767.392 kb on + strand at 767.394 kb on - strand at 767.400 kb on - strand at 767.400 kb on - strand at 767.400 kb on - strand at 767.557 kb on + strand, within Atu3692 at 767.678 kb on + strand, within Atu3692 at 767.767 kb on + strand, within Atu3692 at 767.772 kb on + strand, within Atu3692 at 767.827 kb on + strand, within Atu3692 at 767.885 kb on + strand, within Atu3692 at 767.955 kb on - strand, within Atu3692 at 767.983 kb on - strand at 768.048 kb on + strand at 768.091 kb on - strand at 768.152 kb on + strand at 768.170 kb on - strand, within Atu3693 at 768.278 kb on + strand, within Atu3693 at 768.379 kb on + strand, within Atu3693 at 768.379 kb on + strand, within Atu3693 at 768.498 kb on + strand, within Atu3693 at 768.614 kb on - strand, within Atu3693 at 768.621 kb on - strand, within Atu3693 at 768.626 kb on + strand, within Atu3693 at 768.700 kb on - strand, within Atu3693 at 768.734 kb on + strand, within Atu3693 at 768.807 kb on - strand, within Atu3693 at 768.884 kb on + strand, within Atu3693 at 768.990 kb on - strand at 769.024 kb on + strand at 769.036 kb on - strand at 769.166 kb on - strand at 769.348 kb on + strand at 769.434 kb on - strand, within Atu3694 at 769.503 kb on + strand, within Atu3694 at 769.565 kb on + strand, within Atu3694 at 769.573 kb on - strand, within Atu3694 at 769.691 kb on - strand, within Atu3694 at 769.721 kb on + strand, within Atu3694 at 769.755 kb on - strand, within Atu3694 at 769.801 kb on + strand, within Atu3694 at 769.820 kb on - strand, within Atu3694 at 769.829 kb on + strand, within Atu3694 at 769.831 kb on + strand, within Atu3694 at 769.831 kb on + strand, within Atu3694 at 769.839 kb on - strand, within Atu3694 at 769.857 kb on - strand, within Atu3694 at 769.873 kb on + strand, within Atu3694 at 769.881 kb on - strand, within Atu3694 at 769.927 kb on - strand, within Atu3694 at 770.011 kb on + strand, within Atu3694 at 770.011 kb on + strand, within Atu3694 at 770.019 kb on - strand, within Atu3694
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Tobacco_Leaf remove 767,086 - +0.1 767,097 + -0.7 767,115 - -0.7 767,115 - -0.5 767,116 + -0.3 767,386 + +1.3 767,392 + +0.4 767,394 - -0.2 767,400 - +1.9 767,400 - -0.4 767,400 - -0.3 767,557 + Atu3692 0.15 -1.0 767,678 + Atu3692 0.38 +1.7 767,767 + Atu3692 0.54 -1.4 767,772 + Atu3692 0.55 -1.4 767,827 + Atu3692 0.65 -0.4 767,885 + Atu3692 0.76 -0.1 767,955 - Atu3692 0.89 -1.0 767,983 - +0.4 768,048 + -0.4 768,091 - -1.9 768,152 + -0.0 768,170 - Atu3693 0.11 -0.4 768,278 + Atu3693 0.22 -0.2 768,379 + Atu3693 0.32 -1.3 768,379 + Atu3693 0.32 -0.3 768,498 + Atu3693 0.45 -0.1 768,614 - Atu3693 0.57 -0.4 768,621 - Atu3693 0.57 -0.5 768,626 + Atu3693 0.58 +0.3 768,700 - Atu3693 0.65 +0.8 768,734 + Atu3693 0.69 -0.5 768,807 - Atu3693 0.76 +1.0 768,884 + Atu3693 0.84 -0.5 768,990 - -0.2 769,024 + -0.2 769,036 - -1.0 769,166 - +0.3 769,348 + -0.5 769,434 - Atu3694 0.13 +0.7 769,503 + Atu3694 0.17 -1.0 769,565 + Atu3694 0.20 -0.9 769,573 - Atu3694 0.20 +0.1 769,691 - Atu3694 0.26 +0.6 769,721 + Atu3694 0.27 -0.7 769,755 - Atu3694 0.29 -0.7 769,801 + Atu3694 0.31 +0.7 769,820 - Atu3694 0.32 +0.5 769,829 + Atu3694 0.33 -0.5 769,831 + Atu3694 0.33 +1.4 769,831 + Atu3694 0.33 +0.0 769,839 - Atu3694 0.33 -1.6 769,857 - Atu3694 0.34 +0.5 769,873 + Atu3694 0.35 -0.4 769,881 - Atu3694 0.35 -0.1 769,927 - Atu3694 0.37 -0.2 770,011 + Atu3694 0.42 -1.0 770,011 + Atu3694 0.42 -0.6 770,019 - Atu3694 0.42 -0.2
Or see this region's nucleotide sequence