Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF781

Experiment: Ffm_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF778 and GFF779 overlap by 4 nucleotidesGFF779 and GFF780 are separated by 11 nucleotidesGFF780 and GFF781 overlap by 11 nucleotidesGFF781 and GFF782 overlap by 1 nucleotidesGFF782 and GFF783 overlap by 20 nucleotidesGFF783 and GFF784 are separated by 187 nucleotidesGFF784 and GFF785 are separated by 47 nucleotides GFF778 - Mobile element protein, at 132,163 to 132,408 GFF778 GFF779 - Ant protein, at 132,405 to 132,740 GFF779 GFF780 - FIG00643896: hypothetical protein, at 132,752 to 133,147 GFF780 GFF781 - Phage protein, at 133,137 to 133,373 GFF781 GFF782 - hypothetical protein, at 133,373 to 133,732 GFF782 GFF783 - Phage protein, at 133,713 to 133,922 GFF783 GFF784 - Phage protein, at 134,110 to 134,244 GFF784 GFF785 - hypothetical protein, at 134,292 to 134,486 GFF785 Position (kb) 133 134Strain fitness (log2 ratio) -2 -1 0 1at 132.236 kb on + strand, within GFF778at 132.246 kb on + strand, within GFF778at 132.721 kb on - strandat 133.094 kb on - strand, within GFF780at 133.094 kb on - strand, within GFF780at 133.193 kb on + strand, within GFF781at 133.246 kb on - strand, within GFF781at 133.862 kb on + strand, within GFF783at 134.373 kb on + strand, within GFF785

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Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
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132,236 + GFF778 0.30 +1.2
132,246 + GFF778 0.34 -2.0
132,721 - -0.8
133,094 - GFF780 0.86 -2.1
133,094 - GFF780 0.86 -0.2
133,193 + GFF781 0.24 -1.3
133,246 - GFF781 0.46 -0.6
133,862 + GFF783 0.71 -1.2
134,373 + GFF785 0.42 -0.1

Or see this region's nucleotide sequence