Experiment: Ffm_phage 10 MOI; agar plate assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF769 and GFF770 overlap by 1 nucleotides GFF770 and GFF771 are separated by 6 nucleotides GFF771 and GFF772 are separated by 17 nucleotides GFF772 and GFF773 are separated by 229 nucleotides
GFF769 - Arginine ABC transporter, permease protein ArtM, at 125,967 to 126,635
GFF769
GFF770 - Arginine ABC transporter, permease protein ArtQ, at 126,635 to 127,351
GFF770
GFF771 - Arginine ABC transporter, periplasmic arginine-binding protein ArtI, at 127,358 to 128,089
GFF771
GFF772 - Arginine ABC transporter, ATP-binding protein ArtP, at 128,107 to 128,835
GFF772
GFF773 - probable lipoprotein, at 129,065 to 129,580
GFF773
Position (kb) 127
128
129 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 126.398 kb on - strand, within GFF769 at 126.519 kb on + strand, within GFF769 at 126.520 kb on - strand, within GFF769 at 126.570 kb on - strand at 126.637 kb on - strand at 126.674 kb on + strand at 127.008 kb on + strand, within GFF770 at 127.106 kb on + strand, within GFF770 at 127.215 kb on - strand, within GFF770 at 127.269 kb on - strand, within GFF770 at 127.360 kb on - strand at 127.379 kb on - strand at 127.464 kb on - strand, within GFF771 at 127.511 kb on - strand, within GFF771 at 127.511 kb on - strand, within GFF771 at 127.531 kb on + strand, within GFF771 at 127.698 kb on - strand, within GFF771 at 127.737 kb on + strand, within GFF771 at 127.925 kb on - strand, within GFF771 at 127.972 kb on + strand, within GFF771 at 127.973 kb on - strand, within GFF771 at 127.973 kb on - strand, within GFF771 at 128.562 kb on + strand, within GFF772 at 128.565 kb on - strand, within GFF772 at 128.565 kb on - strand, within GFF772 at 128.596 kb on + strand, within GFF772 at 128.597 kb on - strand, within GFF772 at 128.845 kb on + strand at 128.846 kb on - strand at 128.865 kb on + strand at 128.865 kb on + strand at 128.866 kb on - strand at 128.866 kb on - strand at 128.880 kb on + strand at 128.955 kb on + strand at 128.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay remove 126,398 - GFF769 0.64 -1.8 126,519 + GFF769 0.83 +0.1 126,520 - GFF769 0.83 -0.1 126,570 - -1.2 126,637 - -0.6 126,674 + -2.0 127,008 + GFF770 0.52 -2.7 127,106 + GFF770 0.66 +0.3 127,215 - GFF770 0.81 +0.0 127,269 - GFF770 0.88 +0.2 127,360 - -0.6 127,379 - -2.1 127,464 - GFF771 0.14 -0.9 127,511 - GFF771 0.21 +0.3 127,511 - GFF771 0.21 +0.9 127,531 + GFF771 0.24 -0.6 127,698 - GFF771 0.46 +1.2 127,737 + GFF771 0.52 -0.3 127,925 - GFF771 0.77 -0.9 127,972 + GFF771 0.84 -1.2 127,973 - GFF771 0.84 -0.6 127,973 - GFF771 0.84 +0.0 128,562 + GFF772 0.62 -0.7 128,565 - GFF772 0.63 +1.1 128,565 - GFF772 0.63 -1.6 128,596 + GFF772 0.67 -3.9 128,597 - GFF772 0.67 -2.0 128,845 + -0.0 128,846 - +0.6 128,865 + +1.1 128,865 + +0.5 128,866 - -1.9 128,866 - -0.0 128,880 + +1.8 128,955 + -0.4 128,981 - +0.2
Or see this region's nucleotide sequence