Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF567

Experiment: Ffm_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF565 and GFF566 are separated by 67 nucleotidesGFF566 and GFF567 are separated by 80 nucleotidesGFF567 and GFF568 are separated by 468 nucleotides GFF565 - Putative ribokinase, at 295,494 to 296,708 GFF565 GFF566 - hypothetical protein, at 296,776 to 296,892 GFF566 GFF567 - Putative acetyltransferase, at 296,973 to 297,461 GFF567 GFF568 - FIG00553873: hypothetical protein, at 297,930 to 298,967 GFF568 Position (kb) 296 297 298Strain fitness (log2 ratio) -2 -1 0 1 2at 296.160 kb on - strand, within GFF565at 296.494 kb on + strand, within GFF565at 296.750 kb on - strandat 296.904 kb on + strandat 296.904 kb on + strandat 297.069 kb on - strand, within GFF567at 297.071 kb on - strand, within GFF567at 297.116 kb on + strand, within GFF567at 297.261 kb on - strand, within GFF567at 297.308 kb on + strand, within GFF567at 297.370 kb on - strand, within GFF567at 297.383 kb on - strand, within GFF567at 297.467 kb on - strandat 297.490 kb on - strandat 297.699 kb on + strandat 297.741 kb on + strandat 297.741 kb on + strandat 297.747 kb on + strandat 297.748 kb on - strandat 297.895 kb on - strandat 297.895 kb on - strandat 297.937 kb on + strandat 297.968 kb on + strandat 298.011 kb on - strandat 298.145 kb on + strand, within GFF568at 298.146 kb on - strand, within GFF568at 298.176 kb on - strand, within GFF568

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Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
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296,160 - GFF565 0.55 -0.3
296,494 + GFF565 0.82 -2.4
296,750 - +0.4
296,904 + +0.2
296,904 + -1.6
297,069 - GFF567 0.20 +0.1
297,071 - GFF567 0.20 -0.2
297,116 + GFF567 0.29 +1.1
297,261 - GFF567 0.59 -0.0
297,308 + GFF567 0.69 +1.9
297,370 - GFF567 0.81 -0.5
297,383 - GFF567 0.84 -0.3
297,467 - +0.1
297,490 - -0.5
297,699 + +1.0
297,741 + -0.0
297,741 + +0.1
297,747 + -0.0
297,748 - -0.9
297,895 - -0.3
297,895 - -0.5
297,937 + -1.7
297,968 + +2.3
298,011 - +0.4
298,145 + GFF568 0.21 +0.7
298,146 - GFF568 0.21 +0.2
298,176 - GFF568 0.24 +0.4

Or see this region's nucleotide sequence