Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF565

Experiment: Ffm_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF563 and GFF564 are separated by 53 nucleotidesGFF564 and GFF565 are separated by 15 nucleotidesGFF565 and GFF566 are separated by 67 nucleotidesGFF566 and GFF567 are separated by 80 nucleotides GFF563 - Putative inner membrane protein, at 293,692 to 294,663 GFF563 GFF564 - FIG074102: hypothetical protein, at 294,717 to 295,478 GFF564 GFF565 - Putative ribokinase, at 295,494 to 296,708 GFF565 GFF566 - hypothetical protein, at 296,776 to 296,892 GFF566 GFF567 - Putative acetyltransferase, at 296,973 to 297,461 GFF567 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 294.532 kb on + strand, within GFF563at 294.547 kb on - strand, within GFF563at 294.647 kb on + strandat 294.648 kb on - strandat 294.676 kb on - strandat 294.780 kb on - strandat 295.478 kb on + strandat 295.502 kb on + strandat 295.536 kb on - strandat 295.568 kb on - strandat 295.704 kb on + strand, within GFF565at 295.782 kb on - strand, within GFF565at 296.160 kb on - strand, within GFF565at 296.494 kb on + strand, within GFF565at 296.750 kb on - strandat 296.904 kb on + strandat 296.904 kb on + strandat 297.069 kb on - strand, within GFF567at 297.071 kb on - strand, within GFF567at 297.116 kb on + strand, within GFF567at 297.261 kb on - strand, within GFF567at 297.308 kb on + strand, within GFF567at 297.370 kb on - strand, within GFF567at 297.383 kb on - strand, within GFF567at 297.467 kb on - strandat 297.490 kb on - strandat 297.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
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294,532 + GFF563 0.86 -1.0
294,547 - GFF563 0.88 -0.3
294,647 + -1.8
294,648 - -0.0
294,676 - +0.9
294,780 - -3.2
295,478 + -1.0
295,502 + -0.9
295,536 - -2.3
295,568 - +1.9
295,704 + GFF565 0.17 +0.1
295,782 - GFF565 0.24 -0.0
296,160 - GFF565 0.55 -0.3
296,494 + GFF565 0.82 -2.4
296,750 - +0.4
296,904 + +0.2
296,904 + -1.6
297,069 - GFF567 0.20 +0.1
297,071 - GFF567 0.20 -0.2
297,116 + GFF567 0.29 +1.1
297,261 - GFF567 0.59 -0.0
297,308 + GFF567 0.69 +1.9
297,370 - GFF567 0.81 -0.5
297,383 - GFF567 0.84 -0.3
297,467 - +0.1
297,490 - -0.5
297,699 + +1.0

Or see this region's nucleotide sequence