Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4770

Experiment: Ffm_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4768 and GFF4769 overlap by 1 nucleotidesGFF4769 and GFF4770 are separated by 72 nucleotidesGFF4770 and GFF4771 are separated by 411 nucleotides GFF4768 - FIG032766: hypothetical protein, at 77,190 to 77,405 GFF4768 GFF4769 - FIG001353: Acetyltransferase, at 77,405 to 77,929 GFF4769 GFF4770 - transposase, at 78,002 to 78,142 GFF4770 GFF4771 - Serine/threonine specific protein phosphatase 2 (EC 3.1.3.16), at 78,554 to 79,210 GFF4771 Position (kb) 78 79Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 77.041 kb on - strandat 77.086 kb on - strandat 77.135 kb on - strandat 77.165 kb on - strandat 77.171 kb on - strandat 77.255 kb on - strand, within GFF4768at 77.610 kb on + strand, within GFF4769at 77.610 kb on + strand, within GFF4769at 77.612 kb on + strand, within GFF4769at 77.654 kb on + strand, within GFF4769at 77.655 kb on - strand, within GFF4769at 77.702 kb on - strand, within GFF4769at 77.790 kb on + strand, within GFF4769at 77.790 kb on + strand, within GFF4769at 77.926 kb on - strandat 77.950 kb on + strandat 78.005 kb on + strandat 78.005 kb on + strandat 78.094 kb on - strand, within GFF4770at 78.840 kb on + strand, within GFF4771at 78.852 kb on - strand, within GFF4771at 78.995 kb on + strand, within GFF4771at 79.033 kb on - strand, within GFF4771

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Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
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77,041 - +0.0
77,086 - -0.8
77,135 - -1.5
77,165 - -1.5
77,171 - -0.3
77,255 - GFF4768 0.30 -1.8
77,610 + GFF4769 0.39 +0.6
77,610 + GFF4769 0.39 +0.4
77,612 + GFF4769 0.39 -0.3
77,654 + GFF4769 0.47 -0.2
77,655 - GFF4769 0.48 -0.2
77,702 - GFF4769 0.57 -4.0
77,790 + GFF4769 0.73 -0.1
77,790 + GFF4769 0.73 -0.4
77,926 - -0.0
77,950 + +1.8
78,005 + -0.7
78,005 + +0.6
78,094 - GFF4770 0.65 -1.0
78,840 + GFF4771 0.44 +0.3
78,852 - GFF4771 0.45 -0.4
78,995 + GFF4771 0.67 -0.6
79,033 - GFF4771 0.73 -0.6

Or see this region's nucleotide sequence