Experiment: Ffm_phage 10 MOI; agar plate assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4505 and GFF4506 are separated by 63 nucleotides GFF4506 and GFF4507 are separated by 35 nucleotides GFF4507 and GFF4508 are separated by 126 nucleotides
GFF4505 - Carbon starvation protein A, at 291,488 to 293,593
GFF4505
GFF4506 - COG2879, Hypothetical small protein yjiX, at 293,657 to 293,854
GFF4506
GFF4507 - Glycerol dehydrogenase (EC 1.1.1.6), at 293,890 to 294,978
GFF4507
GFF4508 - Aspartate aminotransferase (EC 2.6.1.1), at 295,105 to 296,265
GFF4508
Position (kb) 293
294
295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 293.051 kb on - strand, within GFF4505 at 293.443 kb on + strand at 293.477 kb on - strand at 293.600 kb on + strand at 293.608 kb on + strand at 293.688 kb on - strand, within GFF4506 at 293.738 kb on + strand, within GFF4506 at 293.738 kb on + strand, within GFF4506 at 293.738 kb on + strand, within GFF4506 at 293.739 kb on - strand, within GFF4506 at 293.739 kb on - strand, within GFF4506 at 293.739 kb on - strand, within GFF4506 at 293.786 kb on + strand, within GFF4506 at 293.786 kb on + strand, within GFF4506 at 293.787 kb on - strand, within GFF4506 at 293.787 kb on - strand, within GFF4506 at 293.894 kb on - strand at 293.960 kb on + strand at 293.988 kb on + strand at 294.230 kb on + strand, within GFF4507 at 294.460 kb on - strand, within GFF4507 at 294.482 kb on + strand, within GFF4507 at 294.482 kb on + strand, within GFF4507 at 294.483 kb on - strand, within GFF4507 at 294.582 kb on - strand, within GFF4507 at 294.582 kb on - strand, within GFF4507 at 294.707 kb on - strand, within GFF4507 at 294.825 kb on - strand, within GFF4507 at 295.352 kb on + strand, within GFF4508 at 295.353 kb on - strand, within GFF4508 at 295.417 kb on + strand, within GFF4508 at 295.486 kb on + strand, within GFF4508 at 295.529 kb on + strand, within GFF4508 at 295.624 kb on - strand, within GFF4508 at 295.725 kb on + strand, within GFF4508 at 295.725 kb on + strand, within GFF4508 at 295.725 kb on + strand, within GFF4508 at 295.726 kb on - strand, within GFF4508 at 295.821 kb on + strand, within GFF4508 at 295.894 kb on + strand, within GFF4508 at 295.895 kb on - strand, within GFF4508
Per-strain Table
Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay remove 293,051 - GFF4505 0.74 +0.5 293,443 + +1.4 293,477 - +2.0 293,600 + -1.7 293,608 + +0.3 293,688 - GFF4506 0.16 +0.1 293,738 + GFF4506 0.41 -3.2 293,738 + GFF4506 0.41 +0.5 293,738 + GFF4506 0.41 -3.3 293,739 - GFF4506 0.41 +0.5 293,739 - GFF4506 0.41 -0.4 293,739 - GFF4506 0.41 -0.3 293,786 + GFF4506 0.65 -0.7 293,786 + GFF4506 0.65 +0.6 293,787 - GFF4506 0.66 +0.6 293,787 - GFF4506 0.66 -1.7 293,894 - +0.5 293,960 + +0.0 293,988 + -0.2 294,230 + GFF4507 0.31 -0.5 294,460 - GFF4507 0.52 -0.0 294,482 + GFF4507 0.54 +0.6 294,482 + GFF4507 0.54 -1.3 294,483 - GFF4507 0.54 -2.0 294,582 - GFF4507 0.64 +0.1 294,582 - GFF4507 0.64 +1.0 294,707 - GFF4507 0.75 +0.5 294,825 - GFF4507 0.86 +0.7 295,352 + GFF4508 0.21 -0.0 295,353 - GFF4508 0.21 +0.6 295,417 + GFF4508 0.27 +0.2 295,486 + GFF4508 0.33 +0.2 295,529 + GFF4508 0.37 +0.4 295,624 - GFF4508 0.45 +0.3 295,725 + GFF4508 0.53 +0.8 295,725 + GFF4508 0.53 -0.8 295,725 + GFF4508 0.53 +0.2 295,726 - GFF4508 0.53 -1.2 295,821 + GFF4508 0.62 +1.0 295,894 + GFF4508 0.68 +1.5 295,895 - GFF4508 0.68 -0.2
Or see this region's nucleotide sequence