Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4498

Experiment: Ffm_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4497 and GFF4498 are separated by 110 nucleotidesGFF4498 and GFF4499 are separated by 62 nucleotides GFF4497 - Ferric enterobactin transport system permease protein FepD (TC 3.A.1.14.2), at 282,779 to 283,786 GFF4497 GFF4498 - Enterobactin exporter EntS, at 283,897 to 285,141 GFF4498 GFF4499 - Ferric enterobactin-binding periplasmic protein FepB (TC 3.A.1.14.2), at 285,204 to 286,160 GFF4499 Position (kb) 283 284 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1at 283.843 kb on - strandat 284.057 kb on + strand, within GFF4498at 284.139 kb on + strand, within GFF4498at 284.184 kb on + strand, within GFF4498at 284.184 kb on + strand, within GFF4498at 284.185 kb on - strand, within GFF4498at 284.234 kb on + strand, within GFF4498at 284.235 kb on - strand, within GFF4498at 284.236 kb on + strand, within GFF4498at 284.237 kb on - strand, within GFF4498at 284.237 kb on - strand, within GFF4498at 284.400 kb on - strand, within GFF4498at 284.465 kb on + strand, within GFF4498at 284.465 kb on + strand, within GFF4498at 284.465 kb on + strand, within GFF4498at 284.767 kb on - strand, within GFF4498at 284.868 kb on + strand, within GFF4498at 284.893 kb on + strand, within GFF4498at 285.084 kb on - strandat 285.099 kb on - strandat 285.099 kb on - strandat 285.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
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283,843 - +0.6
284,057 + GFF4498 0.13 +1.1
284,139 + GFF4498 0.19 +1.2
284,184 + GFF4498 0.23 +0.1
284,184 + GFF4498 0.23 +0.7
284,185 - GFF4498 0.23 +0.7
284,234 + GFF4498 0.27 +0.3
284,235 - GFF4498 0.27 +0.2
284,236 + GFF4498 0.27 -0.4
284,237 - GFF4498 0.27 +0.2
284,237 - GFF4498 0.27 -2.9
284,400 - GFF4498 0.40 +1.4
284,465 + GFF4498 0.46 +0.0
284,465 + GFF4498 0.46 +1.7
284,465 + GFF4498 0.46 -0.6
284,767 - GFF4498 0.70 +0.2
284,868 + GFF4498 0.78 +0.1
284,893 + GFF4498 0.80 +1.0
285,084 - +0.1
285,099 - +0.4
285,099 - +0.2
285,206 - +0.5

Or see this region's nucleotide sequence