Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3689

Experiment: Ffm_phage 10 MOI; agar plate assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3686 and GFF3687 are separated by 289 nucleotidesGFF3687 and GFF3688 are separated by 88 nucleotidesGFF3688 and GFF3689 overlap by 44 nucleotidesGFF3689 and GFF3690 are separated by 263 nucleotidesGFF3690 and GFF3691 overlap by 4 nucleotides GFF3686 - Outer membrane protein F precursor, at 41,381 to 42,472 GFF3686 GFF3687 - hypothetical protein, at 42,762 to 42,914 GFF3687 GFF3688 - Asparaginyl-tRNA synthetase (EC 6.1.1.22), at 43,003 to 43,122 GFF3688 GFF3689 - Asparaginyl-tRNA synthetase (EC 6.1.1.22), at 43,079 to 44,416 GFF3689 GFF3690 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 44,680 to 45,141 GFF3690 GFF3691 - FIG01047584: hypothetical protein, at 45,138 to 45,359 GFF3691 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 42.090 kb on + strand, within GFF3686at 42.223 kb on + strand, within GFF3686at 42.380 kb on - strandat 42.383 kb on - strandat 44.846 kb on + strand, within GFF3690at 44.846 kb on + strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 44.847 kb on - strand, within GFF3690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
remove
42,090 + GFF3686 0.65 -3.0
42,223 + GFF3686 0.77 +0.5
42,380 - +1.6
42,383 - +3.3
44,846 + GFF3690 0.36 -1.8
44,846 + GFF3690 0.36 -2.8
44,847 - GFF3690 0.36 -0.7
44,847 - GFF3690 0.36 +0.9
44,847 - GFF3690 0.36 -0.7

Or see this region's nucleotide sequence