Experiment: Ffm_phage 10 MOI; agar plate assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3076 and GFF3077 are separated by 47 nucleotides GFF3077 and GFF3078 are separated by 68 nucleotides
GFF3076 - LysR family transcriptional regulator STM3121, at 84,795 to 85,673
GFF3076
GFF3077 - Arylsulfatase (EC 3.1.6.1), at 85,721 to 87,460
GFF3077
GFF3078 - Putative arylsulfatase regulator, at 87,529 to 88,713
GFF3078
Position (kb) 85
86
87
88 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 84.757 kb on + strand at 84.758 kb on - strand at 84.874 kb on + strand at 84.874 kb on + strand at 84.875 kb on - strand at 84.902 kb on + strand, within GFF3076 at 84.999 kb on - strand, within GFF3076 at 85.086 kb on - strand, within GFF3076 at 85.181 kb on + strand, within GFF3076 at 85.298 kb on + strand, within GFF3076 at 85.299 kb on - strand, within GFF3076 at 85.562 kb on - strand, within GFF3076 at 85.565 kb on - strand, within GFF3076 at 85.697 kb on - strand at 85.719 kb on - strand at 85.830 kb on + strand at 85.830 kb on + strand at 86.004 kb on - strand, within GFF3077 at 86.057 kb on - strand, within GFF3077 at 86.074 kb on - strand, within GFF3077 at 86.238 kb on - strand, within GFF3077 at 86.258 kb on - strand, within GFF3077 at 86.288 kb on - strand, within GFF3077 at 86.372 kb on - strand, within GFF3077 at 86.480 kb on + strand, within GFF3077 at 86.481 kb on - strand, within GFF3077 at 86.570 kb on - strand, within GFF3077 at 86.570 kb on - strand, within GFF3077 at 86.602 kb on - strand, within GFF3077 at 86.739 kb on + strand, within GFF3077 at 86.821 kb on + strand, within GFF3077 at 86.927 kb on - strand, within GFF3077 at 86.927 kb on - strand, within GFF3077 at 86.928 kb on + strand, within GFF3077 at 86.928 kb on + strand, within GFF3077 at 86.929 kb on - strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.932 kb on - strand, within GFF3077 at 86.932 kb on - strand, within GFF3077 at 86.935 kb on + strand, within GFF3077 at 86.943 kb on - strand, within GFF3077 at 87.100 kb on + strand, within GFF3077 at 87.101 kb on - strand, within GFF3077 at 87.162 kb on - strand, within GFF3077 at 87.261 kb on + strand, within GFF3077 at 87.379 kb on + strand at 87.379 kb on + strand at 87.447 kb on - strand at 87.466 kb on - strand at 87.482 kb on + strand at 87.643 kb on - strand at 87.673 kb on - strand, within GFF3078 at 87.673 kb on - strand, within GFF3078 at 87.701 kb on - strand, within GFF3078 at 87.745 kb on - strand, within GFF3078 at 87.792 kb on + strand, within GFF3078 at 87.799 kb on - strand, within GFF3078 at 87.816 kb on - strand, within GFF3078 at 87.828 kb on + strand, within GFF3078 at 87.829 kb on - strand, within GFF3078 at 88.005 kb on + strand, within GFF3078 at 88.175 kb on - strand, within GFF3078 at 88.202 kb on - strand, within GFF3078 at 88.421 kb on - strand, within GFF3078 at 88.424 kb on - strand, within GFF3078
Per-strain Table
Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay remove 84,757 + -0.3 84,758 - +0.9 84,874 + +0.1 84,874 + +0.8 84,875 - -1.6 84,902 + GFF3076 0.12 +1.1 84,999 - GFF3076 0.23 -3.6 85,086 - GFF3076 0.33 +0.1 85,181 + GFF3076 0.44 -2.5 85,298 + GFF3076 0.57 +1.1 85,299 - GFF3076 0.57 -1.0 85,562 - GFF3076 0.87 -0.5 85,565 - GFF3076 0.88 -1.9 85,697 - -1.8 85,719 - +0.3 85,830 + -0.2 85,830 + +1.0 86,004 - GFF3077 0.16 -3.5 86,057 - GFF3077 0.19 -0.8 86,074 - GFF3077 0.20 -0.1 86,238 - GFF3077 0.30 -0.1 86,258 - GFF3077 0.31 +1.2 86,288 - GFF3077 0.33 -0.1 86,372 - GFF3077 0.37 -1.1 86,480 + GFF3077 0.44 +0.0 86,481 - GFF3077 0.44 +0.8 86,570 - GFF3077 0.49 -0.5 86,570 - GFF3077 0.49 -4.0 86,602 - GFF3077 0.51 +0.3 86,739 + GFF3077 0.59 +0.0 86,821 + GFF3077 0.63 -0.1 86,927 - GFF3077 0.69 -0.3 86,927 - GFF3077 0.69 -0.2 86,928 + GFF3077 0.69 -0.3 86,928 + GFF3077 0.69 -0.3 86,929 - GFF3077 0.69 -0.1 86,931 + GFF3077 0.70 -0.9 86,931 + GFF3077 0.70 -2.7 86,931 + GFF3077 0.70 -2.9 86,931 + GFF3077 0.70 -0.6 86,932 - GFF3077 0.70 -3.5 86,932 - GFF3077 0.70 -0.6 86,935 + GFF3077 0.70 +1.0 86,943 - GFF3077 0.70 +0.4 87,100 + GFF3077 0.79 -1.1 87,101 - GFF3077 0.79 +0.1 87,162 - GFF3077 0.83 -1.3 87,261 + GFF3077 0.89 -3.1 87,379 + +1.8 87,379 + -2.0 87,447 - +0.0 87,466 - -0.4 87,482 + +0.4 87,643 - -3.0 87,673 - GFF3078 0.12 +0.6 87,673 - GFF3078 0.12 -0.7 87,701 - GFF3078 0.15 -0.1 87,745 - GFF3078 0.18 +0.4 87,792 + GFF3078 0.22 +0.1 87,799 - GFF3078 0.23 +1.1 87,816 - GFF3078 0.24 -0.3 87,828 + GFF3078 0.25 +0.3 87,829 - GFF3078 0.25 -0.3 88,005 + GFF3078 0.40 -0.9 88,175 - GFF3078 0.55 +0.6 88,202 - GFF3078 0.57 +0.5 88,421 - GFF3078 0.75 +1.7 88,424 - GFF3078 0.76 -0.1
Or see this region's nucleotide sequence