Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2421

Experiment: Ffm_phage 10 MOI; agar plate assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2420 and GFF2421 are separated by 0 nucleotidesGFF2421 and GFF2422 are separated by 208 nucleotides GFF2420 - Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C, at 33,931 to 36,246 GFF2420 GFF2421 - Alpha-2-macroglobulin, at 36,247 to 41,181 GFF2421 GFF2422 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 41,390 to 42,232 GFF2422 Position (kb) 36 37 38 39 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 35.281 kb on - strand, within GFF2420at 35.317 kb on - strand, within GFF2420at 35.317 kb on - strand, within GFF2420at 35.587 kb on - strand, within GFF2420at 35.709 kb on - strand, within GFF2420at 35.738 kb on - strand, within GFF2420at 35.886 kb on + strand, within GFF2420at 36.229 kb on - strandat 36.248 kb on + strandat 36.249 kb on - strandat 36.305 kb on + strandat 36.306 kb on - strandat 36.339 kb on - strandat 36.440 kb on + strandat 36.441 kb on - strandat 37.045 kb on - strand, within GFF2421at 37.204 kb on - strand, within GFF2421at 37.294 kb on - strand, within GFF2421at 37.294 kb on - strand, within GFF2421at 37.305 kb on + strand, within GFF2421at 37.398 kb on + strand, within GFF2421at 37.399 kb on - strand, within GFF2421at 37.423 kb on - strand, within GFF2421at 37.607 kb on + strand, within GFF2421at 37.659 kb on - strand, within GFF2421at 37.659 kb on - strand, within GFF2421at 37.768 kb on + strand, within GFF2421at 37.857 kb on + strand, within GFF2421at 37.857 kb on + strand, within GFF2421at 37.957 kb on + strand, within GFF2421at 37.958 kb on - strand, within GFF2421at 38.043 kb on + strand, within GFF2421at 38.252 kb on - strand, within GFF2421at 38.420 kb on + strand, within GFF2421at 38.424 kb on + strand, within GFF2421at 38.497 kb on + strand, within GFF2421at 38.662 kb on + strand, within GFF2421at 38.662 kb on + strand, within GFF2421at 38.662 kb on + strand, within GFF2421at 38.663 kb on - strand, within GFF2421at 38.663 kb on - strand, within GFF2421at 38.727 kb on + strand, within GFF2421at 38.727 kb on + strand, within GFF2421at 38.761 kb on - strand, within GFF2421at 38.907 kb on - strand, within GFF2421at 38.983 kb on - strand, within GFF2421at 39.177 kb on - strand, within GFF2421at 39.448 kb on + strand, within GFF2421at 39.448 kb on + strand, within GFF2421at 39.759 kb on + strand, within GFF2421at 40.228 kb on - strand, within GFF2421at 40.293 kb on + strand, within GFF2421at 40.363 kb on - strand, within GFF2421at 40.365 kb on + strand, within GFF2421at 40.367 kb on + strand, within GFF2421at 40.368 kb on - strand, within GFF2421at 40.368 kb on - strand, within GFF2421at 40.368 kb on - strand, within GFF2421at 40.373 kb on + strand, within GFF2421at 40.374 kb on - strand, within GFF2421at 40.403 kb on + strand, within GFF2421at 40.403 kb on + strand, within GFF2421at 40.404 kb on - strand, within GFF2421at 40.432 kb on - strand, within GFF2421at 40.499 kb on + strand, within GFF2421at 40.554 kb on + strand, within GFF2421at 40.728 kb on + strandat 40.829 kb on - strandat 40.997 kb on - strandat 40.999 kb on + strandat 41.041 kb on + strandat 41.253 kb on + strandat 41.326 kb on + strandat 41.326 kb on + strandat 41.434 kb on + strandat 41.435 kb on - strandat 41.435 kb on - strandat 41.591 kb on - strand, within GFF2422at 41.666 kb on + strand, within GFF2422at 41.667 kb on - strand, within GFF2422at 41.667 kb on - strand, within GFF2422at 41.667 kb on - strand, within GFF2422at 41.989 kb on - strand, within GFF2422

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
remove
35,281 - GFF2420 0.58 -2.0
35,317 - GFF2420 0.60 +0.5
35,317 - GFF2420 0.60 +0.0
35,587 - GFF2420 0.72 +0.7
35,709 - GFF2420 0.77 -0.4
35,738 - GFF2420 0.78 +0.1
35,886 + GFF2420 0.84 +1.4
36,229 - +0.1
36,248 + +2.2
36,249 - +0.0
36,305 + +0.2
36,306 - -4.1
36,339 - -2.4
36,440 + +0.7
36,441 - -2.2
37,045 - GFF2421 0.16 -1.6
37,204 - GFF2421 0.19 +0.5
37,294 - GFF2421 0.21 +0.6
37,294 - GFF2421 0.21 -1.2
37,305 + GFF2421 0.21 -0.7
37,398 + GFF2421 0.23 -3.5
37,399 - GFF2421 0.23 -0.5
37,423 - GFF2421 0.24 +1.5
37,607 + GFF2421 0.28 -1.6
37,659 - GFF2421 0.29 +0.2
37,659 - GFF2421 0.29 +0.0
37,768 + GFF2421 0.31 +0.4
37,857 + GFF2421 0.33 -2.2
37,857 + GFF2421 0.33 +1.9
37,957 + GFF2421 0.35 +1.0
37,958 - GFF2421 0.35 -0.7
38,043 + GFF2421 0.36 -0.3
38,252 - GFF2421 0.41 -2.5
38,420 + GFF2421 0.44 +1.0
38,424 + GFF2421 0.44 +0.4
38,497 + GFF2421 0.46 +1.5
38,662 + GFF2421 0.49 +0.4
38,662 + GFF2421 0.49 +0.7
38,662 + GFF2421 0.49 +1.9
38,663 - GFF2421 0.49 +0.7
38,663 - GFF2421 0.49 +0.7
38,727 + GFF2421 0.50 -0.8
38,727 + GFF2421 0.50 +0.2
38,761 - GFF2421 0.51 +1.5
38,907 - GFF2421 0.54 +0.7
38,983 - GFF2421 0.55 +0.9
39,177 - GFF2421 0.59 -0.0
39,448 + GFF2421 0.65 +1.1
39,448 + GFF2421 0.65 +0.2
39,759 + GFF2421 0.71 +0.1
40,228 - GFF2421 0.81 +0.1
40,293 + GFF2421 0.82 -2.2
40,363 - GFF2421 0.83 +0.7
40,365 + GFF2421 0.83 +1.7
40,367 + GFF2421 0.83 -0.1
40,368 - GFF2421 0.84 +1.4
40,368 - GFF2421 0.84 +2.0
40,368 - GFF2421 0.84 -2.8
40,373 + GFF2421 0.84 -1.0
40,374 - GFF2421 0.84 +0.4
40,403 + GFF2421 0.84 -2.8
40,403 + GFF2421 0.84 -1.3
40,404 - GFF2421 0.84 -0.8
40,432 - GFF2421 0.85 +0.7
40,499 + GFF2421 0.86 -1.3
40,554 + GFF2421 0.87 +0.8
40,728 + -0.6
40,829 - -1.2
40,997 - +2.2
40,999 + -0.1
41,041 + +0.2
41,253 + -0.8
41,326 + +0.0
41,326 + +0.1
41,434 + +1.2
41,435 - -2.0
41,435 - +0.3
41,591 - GFF2422 0.24 +0.8
41,666 + GFF2422 0.33 +1.3
41,667 - GFF2422 0.33 +0.9
41,667 - GFF2422 0.33 -0.0
41,667 - GFF2422 0.33 +1.1
41,989 - GFF2422 0.71 +2.0

Or see this region's nucleotide sequence