Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1338

Experiment: Ffm_phage 10 MOI; agar plate assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1336 and GFF1337 overlap by 14 nucleotidesGFF1337 and GFF1338 are separated by 143 nucleotidesGFF1338 and GFF1339 overlap by 4 nucleotidesGFF1339 and GFF1340 are separated by 40 nucleotides GFF1336 - FIG01047778: hypothetical protein, at 44,061 to 44,819 GFF1336 GFF1337 - FIG01045819: hypothetical protein, at 44,806 to 45,318 GFF1337 GFF1338 - Putative outer membrane protein, at 45,462 to 46,538 GFF1338 GFF1339 - Probable fimbrial chaperone protein, at 46,535 to 47,278 GFF1339 GFF1340 - FIG036507: Fimbriae usher protein StdB, at 47,319 to 49,808 GFF1340 Position (kb) 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 44.472 kb on + strand, within GFF1336at 44.473 kb on - strand, within GFF1336at 44.473 kb on - strand, within GFF1336at 44.603 kb on - strand, within GFF1336at 44.641 kb on - strand, within GFF1336at 44.696 kb on - strand, within GFF1336at 44.996 kb on + strand, within GFF1337at 45.018 kb on + strand, within GFF1337at 45.021 kb on + strand, within GFF1337at 45.184 kb on - strand, within GFF1337at 45.226 kb on - strand, within GFF1337at 45.851 kb on - strand, within GFF1338at 45.851 kb on - strand, within GFF1338at 45.863 kb on + strand, within GFF1338at 46.439 kb on + strandat 46.439 kb on + strandat 46.443 kb on + strandat 46.443 kb on + strandat 46.621 kb on + strand, within GFF1339at 46.621 kb on + strand, within GFF1339at 46.622 kb on - strand, within GFF1339at 46.622 kb on - strand, within GFF1339at 46.623 kb on + strand, within GFF1339at 46.668 kb on - strand, within GFF1339at 46.668 kb on - strand, within GFF1339at 46.730 kb on - strand, within GFF1339at 46.761 kb on + strand, within GFF1339at 46.764 kb on + strand, within GFF1339at 46.850 kb on - strand, within GFF1339at 46.867 kb on - strand, within GFF1339at 46.867 kb on - strand, within GFF1339at 46.981 kb on + strand, within GFF1339at 46.981 kb on + strand, within GFF1339at 46.981 kb on + strand, within GFF1339at 46.982 kb on - strand, within GFF1339at 46.982 kb on - strand, within GFF1339at 47.038 kb on + strand, within GFF1339at 47.179 kb on + strand, within GFF1339at 47.180 kb on - strand, within GFF1339at 47.314 kb on + strandat 47.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ffm_phage 10 MOI; agar plate assay
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44,472 + GFF1336 0.54 -0.5
44,473 - GFF1336 0.54 +1.1
44,473 - GFF1336 0.54 -0.4
44,603 - GFF1336 0.71 +0.7
44,641 - GFF1336 0.76 +0.3
44,696 - GFF1336 0.84 -2.8
44,996 + GFF1337 0.37 -0.4
45,018 + GFF1337 0.41 -0.3
45,021 + GFF1337 0.42 -0.1
45,184 - GFF1337 0.74 +0.7
45,226 - GFF1337 0.82 +0.5
45,851 - GFF1338 0.36 +1.2
45,851 - GFF1338 0.36 -0.6
45,863 + GFF1338 0.37 +0.8
46,439 + +0.1
46,439 + -0.6
46,443 + +0.8
46,443 + +0.9
46,621 + GFF1339 0.12 +0.2
46,621 + GFF1339 0.12 -0.7
46,622 - GFF1339 0.12 -1.7
46,622 - GFF1339 0.12 -2.2
46,623 + GFF1339 0.12 +0.3
46,668 - GFF1339 0.18 -0.2
46,668 - GFF1339 0.18 -0.1
46,730 - GFF1339 0.26 +0.5
46,761 + GFF1339 0.30 +0.7
46,764 + GFF1339 0.31 -0.8
46,850 - GFF1339 0.42 +1.4
46,867 - GFF1339 0.45 +1.8
46,867 - GFF1339 0.45 +0.4
46,981 + GFF1339 0.60 -1.3
46,981 + GFF1339 0.60 +1.6
46,981 + GFF1339 0.60 +0.6
46,982 - GFF1339 0.60 -1.3
46,982 - GFF1339 0.60 +1.0
47,038 + GFF1339 0.68 -0.8
47,179 + GFF1339 0.87 -0.3
47,180 - GFF1339 0.87 +1.9
47,314 + -0.4
47,321 - +0.4

Or see this region's nucleotide sequence