Strain Fitness in Agrobacterium fabrum C58 around Atu3521
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | LB |
|---|---|---|---|---|---|
| remove | |||||
| 570,003 | - | +0.3 | |||
| 570,052 | + | +0.4 | |||
| 570,083 | - | -0.4 | |||
| 570,243 | + | Atu3521 | 0.15 | +0.7 | |
| 570,442 | + | Atu3521 | 0.37 | -0.1 | |
| 570,442 | + | Atu3521 | 0.37 | +0.1 | |
| 570,475 | - | Atu3521 | 0.40 | +0.8 | |
| 570,604 | - | Atu3521 | 0.55 | +2.2 | |
| 570,633 | - | Atu3521 | 0.58 | +0.3 | |
| 570,731 | - | Atu3521 | 0.69 | -1.1 | |
| 570,795 | + | Atu3521 | 0.76 | -0.1 | |
| 570,837 | + | Atu3521 | 0.81 | -0.4 | |
| 570,931 | + | -1.0 | |||
| 571,135 | - | -0.6 | |||
| 571,137 | - | -0.2 | |||
| 571,147 | - | -0.9 | |||
| 571,172 | + | -0.5 | |||
| 571,172 | + | +0.4 | |||
| 571,212 | - | Atu3522 | 0.10 | +0.1 | |
| 571,229 | + | Atu3522 | 0.12 | +0.0 | |
| 571,252 | + | Atu3522 | 0.14 | +0.1 | |
| 571,698 | - | Atu3522 | 0.51 | +0.3 |
Or see this region's nucleotide sequence