Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3471 and Atu3472 are separated by 2 nucleotides Atu3472 and Atu3473 are separated by 3 nucleotides
Atu3471: Atu3471 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 517,905 to 519,182
Atu3471
Atu3472: Atu3472 - 2-oxoisovalerate dehydrogenase subunit beta, at 519,185 to 520,198
Atu3472
Atu3473: Atu3473 - 2-oxoisovalerate dehydrogenase subunit alpha, at 520,202 to 521,440
Atu3473
Position (kb)
519
520
521 Strain fitness (log2 ratio)
-2
-1
0
1 at 518.228 kb on + strand, within Atu3471 at 518.248 kb on - strand, within Atu3471 at 518.248 kb on - strand, within Atu3471 at 518.288 kb on - strand, within Atu3471 at 518.311 kb on + strand, within Atu3471 at 518.344 kb on + strand, within Atu3471 at 518.409 kb on + strand, within Atu3471 at 518.607 kb on - strand, within Atu3471 at 518.612 kb on - strand, within Atu3471 at 518.701 kb on + strand, within Atu3471 at 518.701 kb on + strand, within Atu3471 at 518.707 kb on + strand, within Atu3471 at 518.709 kb on - strand, within Atu3471 at 518.715 kb on - strand, within Atu3471 at 518.797 kb on + strand, within Atu3471 at 518.840 kb on - strand, within Atu3471 at 518.927 kb on - strand, within Atu3471 at 518.927 kb on - strand, within Atu3471 at 519.069 kb on + strand at 519.077 kb on - strand at 519.191 kb on - strand at 519.419 kb on - strand, within Atu3472 at 519.485 kb on - strand, within Atu3472 at 519.699 kb on + strand, within Atu3472 at 519.700 kb on + strand, within Atu3472 at 519.774 kb on - strand, within Atu3472 at 519.930 kb on - strand, within Atu3472 at 519.984 kb on - strand, within Atu3472 at 520.078 kb on - strand, within Atu3472 at 520.149 kb on + strand at 520.381 kb on + strand, within Atu3473 at 520.402 kb on + strand, within Atu3473 at 520.403 kb on - strand, within Atu3473 at 520.461 kb on + strand, within Atu3473 at 520.501 kb on - strand, within Atu3473 at 520.534 kb on + strand, within Atu3473 at 520.542 kb on - strand, within Atu3473 at 520.547 kb on - strand, within Atu3473 at 520.572 kb on - strand, within Atu3473 at 520.583 kb on + strand, within Atu3473 at 520.583 kb on + strand, within Atu3473 at 520.591 kb on - strand, within Atu3473 at 520.591 kb on - strand, within Atu3473 at 520.629 kb on - strand, within Atu3473 at 520.739 kb on - strand, within Atu3473 at 520.931 kb on - strand, within Atu3473 at 520.979 kb on - strand, within Atu3473 at 521.134 kb on - strand, within Atu3473
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 518,228 + Atu3471 0.25 -0.3 518,248 - Atu3471 0.27 -0.2 518,248 - Atu3471 0.27 -1.1 518,288 - Atu3471 0.30 -1.0 518,311 + Atu3471 0.32 -0.5 518,344 + Atu3471 0.34 -0.4 518,409 + Atu3471 0.39 -0.8 518,607 - Atu3471 0.55 -1.6 518,612 - Atu3471 0.55 -1.3 518,701 + Atu3471 0.62 +1.6 518,701 + Atu3471 0.62 -0.9 518,707 + Atu3471 0.63 -0.8 518,709 - Atu3471 0.63 -0.1 518,715 - Atu3471 0.63 -1.3 518,797 + Atu3471 0.70 -1.5 518,840 - Atu3471 0.73 +0.3 518,927 - Atu3471 0.80 -0.4 518,927 - Atu3471 0.80 -1.0 519,069 + -0.1 519,077 - -1.4 519,191 - -0.6 519,419 - Atu3472 0.23 -0.1 519,485 - Atu3472 0.30 +0.2 519,699 + Atu3472 0.51 -0.4 519,700 + Atu3472 0.51 -0.8 519,774 - Atu3472 0.58 -0.7 519,930 - Atu3472 0.73 +0.4 519,984 - Atu3472 0.79 -0.7 520,078 - Atu3472 0.88 -0.8 520,149 + -0.3 520,381 + Atu3473 0.14 -0.6 520,402 + Atu3473 0.16 -1.0 520,403 - Atu3473 0.16 -0.9 520,461 + Atu3473 0.21 -1.1 520,501 - Atu3473 0.24 -0.3 520,534 + Atu3473 0.27 -1.8 520,542 - Atu3473 0.27 +0.6 520,547 - Atu3473 0.28 -0.5 520,572 - Atu3473 0.30 -0.6 520,583 + Atu3473 0.31 -0.4 520,583 + Atu3473 0.31 -1.2 520,591 - Atu3473 0.31 -0.1 520,591 - Atu3473 0.31 +0.6 520,629 - Atu3473 0.34 -0.8 520,739 - Atu3473 0.43 -1.1 520,931 - Atu3473 0.59 -1.5 520,979 - Atu3473 0.63 +1.2 521,134 - Atu3473 0.75 -0.8
Or see this region's nucleotide sequence