Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3392 and Atu3393 are separated by 176 nucleotides Atu3393 and Atu3394 overlap by 4 nucleotides Atu3394 and Atu3395 overlap by 4 nucleotides
Atu3392: Atu3392 - methyltransferase, at 436,675 to 437,499
Atu3392
Atu3393: Atu3393 - pseudoazurin, at 437,676 to 438,116
Atu3393
Atu3394: Atu3394 - iron ABC transporter ATPase, at 438,113 to 438,913
Atu3394
Atu3395: Atu3395 - iron (III ABC transporter permease ABC transporter permease, at 438,910 to 439,863
Atu3395
Position (kb) 438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 437.229 kb on - strand, within Atu3392 at 437.451 kb on + strand at 437.451 kb on + strand at 437.488 kb on + strand at 437.496 kb on - strand at 437.543 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.548 kb on + strand at 437.551 kb on - strand at 437.607 kb on - strand at 437.609 kb on + strand at 437.612 kb on - strand at 437.617 kb on - strand at 437.617 kb on - strand at 437.732 kb on - strand, within Atu3393 at 437.781 kb on - strand, within Atu3393 at 437.793 kb on + strand, within Atu3393 at 437.808 kb on - strand, within Atu3393 at 438.070 kb on + strand, within Atu3393 at 438.088 kb on - strand at 438.107 kb on - strand at 438.292 kb on + strand, within Atu3394 at 438.784 kb on - strand, within Atu3394 at 438.801 kb on - strand, within Atu3394 at 438.988 kb on - strand at 439.080 kb on - strand, within Atu3395 at 439.083 kb on + strand, within Atu3395 at 439.089 kb on + strand, within Atu3395 at 439.187 kb on + strand, within Atu3395 at 439.207 kb on - strand, within Atu3395 at 439.258 kb on + strand, within Atu3395 at 439.274 kb on + strand, within Atu3395 at 439.377 kb on - strand, within Atu3395 at 439.480 kb on + strand, within Atu3395 at 439.507 kb on - strand, within Atu3395 at 439.682 kb on - strand, within Atu3395 at 439.742 kb on + strand, within Atu3395 at 439.742 kb on - strand, within Atu3395 at 439.754 kb on + strand, within Atu3395 at 439.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 437,229 - Atu3392 0.67 +1.0 437,451 + +0.2 437,451 + -0.5 437,488 + -0.3 437,496 - -1.8 437,543 + -0.5 437,548 + +1.6 437,548 + +0.6 437,548 + +0.4 437,551 - +0.4 437,607 - +0.0 437,609 + +0.0 437,612 - -2.0 437,617 - -0.8 437,617 - -0.1 437,732 - Atu3393 0.13 +0.2 437,781 - Atu3393 0.24 +0.6 437,793 + Atu3393 0.27 -0.3 437,808 - Atu3393 0.30 +0.4 438,070 + Atu3393 0.89 -1.1 438,088 - -0.6 438,107 - -0.7 438,292 + Atu3394 0.22 -3.1 438,784 - Atu3394 0.84 -0.8 438,801 - Atu3394 0.86 -1.2 438,988 - -0.2 439,080 - Atu3395 0.18 -0.8 439,083 + Atu3395 0.18 -0.5 439,089 + Atu3395 0.19 -1.3 439,187 + Atu3395 0.29 +0.0 439,207 - Atu3395 0.31 -1.3 439,258 + Atu3395 0.36 +0.6 439,274 + Atu3395 0.38 -0.5 439,377 - Atu3395 0.49 -1.1 439,480 + Atu3395 0.60 -1.6 439,507 - Atu3395 0.63 -0.9 439,682 - Atu3395 0.81 -1.5 439,742 + Atu3395 0.87 +0.0 439,742 - Atu3395 0.87 -1.4 439,754 + Atu3395 0.88 -0.4 439,802 + -1.0
Or see this region's nucleotide sequence