Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0703 and Atu0704 are separated by 15 nucleotides Atu0704 and Atu0705 overlap by 1 nucleotides Atu0705 and Atu0706 are separated by 109 nucleotides
Atu0703: Atu0703 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 703,594 to 704,223
Atu0703
Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153
Atu0704
Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926
Atu0705
Atu0706: Atu0706 - transcriptional regulator, IclR family, at 706,036 to 706,875
Atu0706
Position (kb) 705
706 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 704.336 kb on + strand, within Atu0704 at 704.336 kb on + strand, within Atu0704 at 704.358 kb on + strand, within Atu0704 at 704.474 kb on - strand, within Atu0704 at 704.484 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.571 kb on - strand, within Atu0704 at 704.603 kb on - strand, within Atu0704 at 704.622 kb on + strand, within Atu0704 at 704.651 kb on + strand, within Atu0704 at 704.693 kb on - strand, within Atu0704 at 704.747 kb on + strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.804 kb on + strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.916 kb on - strand, within Atu0704 at 704.917 kb on - strand, within Atu0704 at 704.951 kb on + strand, within Atu0704 at 704.998 kb on - strand, within Atu0704 at 705.125 kb on - strand at 705.131 kb on - strand at 705.151 kb on + strand at 705.294 kb on + strand, within Atu0705 at 705.441 kb on - strand, within Atu0705 at 705.499 kb on + strand, within Atu0705 at 705.507 kb on - strand, within Atu0705 at 705.527 kb on - strand, within Atu0705 at 705.529 kb on + strand, within Atu0705 at 705.569 kb on + strand, within Atu0705 at 705.598 kb on - strand, within Atu0705 at 705.670 kb on + strand, within Atu0705 at 705.678 kb on - strand, within Atu0705 at 705.772 kb on + strand, within Atu0705 at 705.775 kb on - strand, within Atu0705 at 705.828 kb on + strand, within Atu0705 at 705.886 kb on + strand at 705.886 kb on + strand at 705.888 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 705.894 kb on - strand at 706.008 kb on + strand at 706.016 kb on - strand at 706.086 kb on - strand at 706.214 kb on - strand, within Atu0706 at 706.292 kb on + strand, within Atu0706 at 706.310 kb on - strand, within Atu0706 at 706.328 kb on - strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.331 kb on + strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.339 kb on - strand, within Atu0706 at 706.414 kb on - strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.443 kb on + strand, within Atu0706 at 706.462 kb on - strand, within Atu0706 at 706.520 kb on + strand, within Atu0706 at 706.662 kb on - strand, within Atu0706 at 706.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 704,336 + Atu0704 0.11 -0.4 704,336 + Atu0704 0.11 +0.4 704,358 + Atu0704 0.13 -0.2 704,474 - Atu0704 0.26 -0.1 704,484 - Atu0704 0.27 +0.1 704,541 - Atu0704 0.33 -0.0 704,541 - Atu0704 0.33 -0.2 704,571 - Atu0704 0.36 +0.8 704,603 - Atu0704 0.40 -0.3 704,622 + Atu0704 0.42 -0.3 704,651 + Atu0704 0.45 -0.1 704,693 - Atu0704 0.50 -0.6 704,747 + Atu0704 0.56 +0.1 704,755 - Atu0704 0.56 -0.3 704,755 - Atu0704 0.56 +0.8 704,804 + Atu0704 0.62 +0.2 704,812 - Atu0704 0.63 +0.5 704,812 - Atu0704 0.63 -0.1 704,812 - Atu0704 0.63 +1.4 704,812 - Atu0704 0.63 -0.0 704,916 - Atu0704 0.74 -0.4 704,917 - Atu0704 0.74 +0.2 704,951 + Atu0704 0.78 -3.0 704,998 - Atu0704 0.83 -0.1 705,125 - +1.0 705,131 - +0.3 705,151 + +0.2 705,294 + Atu0705 0.18 +0.7 705,441 - Atu0705 0.37 -1.9 705,499 + Atu0705 0.45 -0.2 705,507 - Atu0705 0.46 -0.7 705,527 - Atu0705 0.48 -0.1 705,529 + Atu0705 0.49 +0.3 705,569 + Atu0705 0.54 +0.2 705,598 - Atu0705 0.57 -0.1 705,670 + Atu0705 0.67 -0.3 705,678 - Atu0705 0.68 +0.0 705,772 + Atu0705 0.80 +0.8 705,775 - Atu0705 0.80 -0.2 705,828 + Atu0705 0.87 -0.3 705,886 + -1.2 705,886 + -1.2 705,888 - +0.4 705,894 - -0.2 705,894 - -2.8 705,894 - +0.2 706,008 + -0.5 706,016 - +0.1 706,086 - -1.0 706,214 - Atu0706 0.21 -0.4 706,292 + Atu0706 0.30 -0.4 706,310 - Atu0706 0.33 +0.4 706,328 - Atu0706 0.35 +1.0 706,331 + Atu0706 0.35 -0.4 706,331 + Atu0706 0.35 -0.8 706,331 + Atu0706 0.35 +0.4 706,339 - Atu0706 0.36 -0.4 706,339 - Atu0706 0.36 -0.8 706,414 - Atu0706 0.45 +0.1 706,443 + Atu0706 0.48 +0.1 706,443 + Atu0706 0.48 +0.1 706,462 - Atu0706 0.51 -0.4 706,520 + Atu0706 0.58 -0.1 706,662 - Atu0706 0.75 -0.5 706,799 - -0.0
Or see this region's nucleotide sequence