Strain Fitness in Agrobacterium fabrum C58 around Atu5477

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5476 and Atu5477 are separated by 26 nucleotidesAtu5477 and Atu5478 overlap by 4 nucleotides Atu5476: Atu5476 - CTP synthase, at 467,628 to 468,851 Atu5476 Atu5477: Atu5477 - peptidase, at 468,878 to 470,047 Atu5477 Atu5478: Atu5478 - chloromuconate cycloisomerase, at 470,044 to 471,141 Atu5478 Position (kb) 468 469 470 471Strain fitness (log2 ratio) -2 -1 0 1 2at 467.885 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.885 kb on + strand, within Atu5476at 467.890 kb on + strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.893 kb on - strand, within Atu5476at 467.916 kb on + strand, within Atu5476at 467.943 kb on - strand, within Atu5476at 468.137 kb on - strand, within Atu5476at 468.231 kb on - strand, within Atu5476at 468.248 kb on - strand, within Atu5476at 468.306 kb on + strand, within Atu5476at 468.371 kb on - strand, within Atu5476at 468.404 kb on - strand, within Atu5476at 468.429 kb on + strand, within Atu5476at 468.437 kb on - strand, within Atu5476at 468.462 kb on + strand, within Atu5476at 468.476 kb on + strand, within Atu5476at 468.553 kb on + strand, within Atu5476at 468.570 kb on + strand, within Atu5476at 468.570 kb on + strand, within Atu5476at 468.586 kb on - strand, within Atu5476at 468.609 kb on - strand, within Atu5476at 468.621 kb on - strand, within Atu5476at 468.623 kb on + strand, within Atu5476at 468.700 kb on + strand, within Atu5476at 468.718 kb on - strand, within Atu5476at 468.741 kb on - strandat 468.823 kb on + strandat 468.831 kb on - strandat 468.927 kb on + strandat 468.935 kb on - strandat 468.955 kb on + strandat 468.997 kb on + strand, within Atu5477at 469.005 kb on - strand, within Atu5477at 469.120 kb on + strand, within Atu5477at 469.147 kb on + strand, within Atu5477at 469.171 kb on - strand, within Atu5477at 469.171 kb on - strand, within Atu5477at 469.219 kb on + strand, within Atu5477at 469.230 kb on - strand, within Atu5477at 469.251 kb on + strand, within Atu5477at 469.268 kb on + strand, within Atu5477at 469.268 kb on + strand, within Atu5477at 469.276 kb on - strand, within Atu5477at 469.291 kb on - strand, within Atu5477at 469.335 kb on + strand, within Atu5477at 469.359 kb on - strand, within Atu5477at 469.388 kb on - strand, within Atu5477at 469.419 kb on - strand, within Atu5477at 469.421 kb on + strand, within Atu5477at 469.426 kb on + strand, within Atu5477at 469.451 kb on + strand, within Atu5477at 469.451 kb on + strand, within Atu5477at 469.521 kb on + strand, within Atu5477at 469.531 kb on - strand, within Atu5477at 469.581 kb on + strand, within Atu5477at 469.581 kb on + strand, within Atu5477at 469.631 kb on + strand, within Atu5477at 469.631 kb on + strand, within Atu5477at 469.639 kb on + strand, within Atu5477at 469.639 kb on - strand, within Atu5477at 469.639 kb on - strand, within Atu5477at 469.676 kb on - strand, within Atu5477at 469.687 kb on - strand, within Atu5477at 469.748 kb on - strand, within Atu5477at 469.752 kb on - strand, within Atu5477at 470.038 kb on + strandat 470.075 kb on - strandat 470.307 kb on + strand, within Atu5478at 470.435 kb on + strand, within Atu5478at 470.443 kb on - strand, within Atu5478at 470.498 kb on - strand, within Atu5478at 470.498 kb on - strand, within Atu5478at 470.501 kb on - strand, within Atu5478at 470.546 kb on + strand, within Atu5478at 470.559 kb on - strand, within Atu5478at 470.588 kb on - strand, within Atu5478at 470.626 kb on + strand, within Atu5478at 470.661 kb on + strand, within Atu5478at 470.662 kb on - strand, within Atu5478at 470.669 kb on - strand, within Atu5478at 470.726 kb on + strand, within Atu5478at 470.726 kb on + strand, within Atu5478at 470.734 kb on - strand, within Atu5478at 470.792 kb on - strand, within Atu5478at 470.796 kb on + strand, within Atu5478at 470.804 kb on - strand, within Atu5478at 470.804 kb on - strand, within Atu5478at 470.837 kb on + strand, within Atu5478at 470.893 kb on - strand, within Atu5478at 470.894 kb on - strand, within Atu5478at 470.932 kb on - strand, within Atu5478at 470.954 kb on + strand, within Atu5478at 470.954 kb on + strand, within Atu5478at 470.961 kb on + strand, within Atu5478at 470.961 kb on + strand, within Atu5478at 470.962 kb on - strand, within Atu5478at 470.962 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.969 kb on - strand, within Atu5478at 470.975 kb on - strand, within Atu5478at 471.030 kb on + strand, within Atu5478

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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467,885 + Atu5476 0.21 -0.1
467,885 + Atu5476 0.21 +0.2
467,885 + Atu5476 0.21 +0.5
467,890 + Atu5476 0.21 +0.0
467,893 - Atu5476 0.22 -0.6
467,893 - Atu5476 0.22 +1.0
467,893 - Atu5476 0.22 -0.3
467,916 + Atu5476 0.24 -0.3
467,943 - Atu5476 0.26 +0.9
468,137 - Atu5476 0.42 +0.3
468,231 - Atu5476 0.49 -0.1
468,248 - Atu5476 0.51 -0.0
468,306 + Atu5476 0.55 +2.2
468,371 - Atu5476 0.61 -2.7
468,404 - Atu5476 0.63 -1.3
468,429 + Atu5476 0.65 +0.9
468,437 - Atu5476 0.66 -0.4
468,462 + Atu5476 0.68 -0.1
468,476 + Atu5476 0.69 +0.1
468,553 + Atu5476 0.76 +0.4
468,570 + Atu5476 0.77 +0.4
468,570 + Atu5476 0.77 +0.0
468,586 - Atu5476 0.78 +0.2
468,609 - Atu5476 0.80 +0.0
468,621 - Atu5476 0.81 -0.0
468,623 + Atu5476 0.81 -0.2
468,700 + Atu5476 0.88 +0.4
468,718 - Atu5476 0.89 +0.8
468,741 - -0.8
468,823 + -0.7
468,831 - +1.0
468,927 + +0.2
468,935 - -0.2
468,955 + -0.3
468,997 + Atu5477 0.10 +0.7
469,005 - Atu5477 0.11 +0.5
469,120 + Atu5477 0.21 +0.6
469,147 + Atu5477 0.23 -0.5
469,171 - Atu5477 0.25 +1.5
469,171 - Atu5477 0.25 +1.4
469,219 + Atu5477 0.29 -0.0
469,230 - Atu5477 0.30 -0.1
469,251 + Atu5477 0.32 +0.7
469,268 + Atu5477 0.33 +0.1
469,268 + Atu5477 0.33 +0.2
469,276 - Atu5477 0.34 -0.2
469,291 - Atu5477 0.35 +0.1
469,335 + Atu5477 0.39 +0.2
469,359 - Atu5477 0.41 +0.0
469,388 - Atu5477 0.44 +0.4
469,419 - Atu5477 0.46 -1.2
469,421 + Atu5477 0.46 +1.2
469,426 + Atu5477 0.47 -0.1
469,451 + Atu5477 0.49 +0.2
469,451 + Atu5477 0.49 +0.9
469,521 + Atu5477 0.55 +0.3
469,531 - Atu5477 0.56 -0.6
469,581 + Atu5477 0.60 -0.0
469,581 + Atu5477 0.60 -0.1
469,631 + Atu5477 0.64 +0.6
469,631 + Atu5477 0.64 +0.2
469,639 + Atu5477 0.65 +0.1
469,639 - Atu5477 0.65 +0.4
469,639 - Atu5477 0.65 -0.1
469,676 - Atu5477 0.68 +0.3
469,687 - Atu5477 0.69 +2.2
469,748 - Atu5477 0.74 +0.9
469,752 - Atu5477 0.75 +1.1
470,038 + -0.4
470,075 - +1.0
470,307 + Atu5478 0.24 +0.1
470,435 + Atu5478 0.36 +0.1
470,443 - Atu5478 0.36 -0.2
470,498 - Atu5478 0.41 +0.2
470,498 - Atu5478 0.41 -1.3
470,501 - Atu5478 0.42 +0.2
470,546 + Atu5478 0.46 +0.1
470,559 - Atu5478 0.47 +0.1
470,588 - Atu5478 0.50 -1.8
470,626 + Atu5478 0.53 +0.4
470,661 + Atu5478 0.56 -0.2
470,662 - Atu5478 0.56 -1.0
470,669 - Atu5478 0.57 -0.4
470,726 + Atu5478 0.62 +1.2
470,726 + Atu5478 0.62 -0.1
470,734 - Atu5478 0.63 -0.6
470,792 - Atu5478 0.68 -0.2
470,796 + Atu5478 0.68 -0.3
470,804 - Atu5478 0.69 +0.2
470,804 - Atu5478 0.69 -0.1
470,837 + Atu5478 0.72 +1.1
470,893 - Atu5478 0.77 +0.5
470,894 - Atu5478 0.77 -1.5
470,932 - Atu5478 0.81 -0.1
470,954 + Atu5478 0.83 -0.5
470,954 + Atu5478 0.83 -0.5
470,961 + Atu5478 0.84 -0.1
470,961 + Atu5478 0.84 +0.1
470,962 - Atu5478 0.84 +0.1
470,962 - Atu5478 0.84 -0.2
470,969 - Atu5478 0.84 +0.7
470,969 - Atu5478 0.84 +0.3
470,969 - Atu5478 0.84 +0.3
470,969 - Atu5478 0.84 +1.5
470,969 - Atu5478 0.84 +0.4
470,975 - Atu5478 0.85 +0.6
471,030 + Atu5478 0.90 -0.5

Or see this region's nucleotide sequence