Strain Fitness in Agrobacterium fabrum C58 around Atu4053

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu4051 and Atu4052 overlap by 1 nucleotidesAtu4052 and Atu4053 overlap by 4 nucleotidesAtu4053 and Atu4054 are separated by 17 nucleotides Atu4051: Atu4051 - succinoglycan biosynthesis glycosyltransferase, at 1,168,216 to 1,169,196 Atu4051 Atu4052: Atu4052 - UDP-hexose transferase, at 1,169,196 to 1,170,140 Atu4052 Atu4053: Atu4053 - succinoglycan biosynthesis protein, at 1,170,137 to 1,171,135 Atu4053 Atu4054: Atu4054 - succinoglycan biosynthesis protein, at 1,171,153 to 1,172,334 Atu4054 Position (kb) 1170 1171 1172Strain fitness (log2 ratio) -2 -1 0 1at 1170.205 kb on - strandat 1170.875 kb on + strand, within Atu4053at 1170.898 kb on - strand, within Atu4053at 1171.158 kb on - strandat 1171.168 kb on - strandat 1171.216 kb on + strandat 1171.224 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,170,205 - +0.2
1,170,875 + Atu4053 0.74 -2.2
1,170,898 - Atu4053 0.76 -0.5
1,171,158 - -0.7
1,171,168 - +0.3
1,171,216 + -0.0
1,171,224 - -0.6

Or see this region's nucleotide sequence