Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3817 and Atu3818 are separated by 129 nucleotides Atu3818 and Atu3819 overlap by 4 nucleotides Atu3819 and Atu3820 overlap by 4 nucleotides
Atu3817: Atu3817 - dehydratase, at 912,674 to 914,185
Atu3817
Atu3818: Atu3818 - ribose ABC transporter ATPase, at 914,315 to 915,814
Atu3818
Atu3819: Atu3819 - ribose ABC transporter permease, at 915,811 to 916,809
Atu3819
Atu3820: Atu3820 - ribose ABC transporter permease, at 916,806 to 917,771
Atu3820
Position (kb) 914
915
916 Strain fitness (log2 ratio) -2
-1
0
1
2 at 913.322 kb on - strand, within Atu3817 at 913.460 kb on - strand, within Atu3817 at 913.460 kb on - strand, within Atu3817 at 913.607 kb on + strand, within Atu3817 at 913.671 kb on + strand, within Atu3817 at 913.678 kb on - strand, within Atu3817 at 913.816 kb on - strand, within Atu3817 at 913.816 kb on - strand, within Atu3817 at 913.894 kb on + strand, within Atu3817 at 913.934 kb on - strand, within Atu3817 at 913.965 kb on - strand, within Atu3817 at 913.980 kb on + strand, within Atu3817 at 914.023 kb on - strand, within Atu3817 at 914.232 kb on - strand at 914.319 kb on - strand at 914.370 kb on + strand at 914.402 kb on + strand at 914.402 kb on + strand at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.481 kb on + strand, within Atu3818 at 914.533 kb on - strand, within Atu3818 at 914.536 kb on + strand, within Atu3818 at 914.600 kb on + strand, within Atu3818 at 914.610 kb on - strand, within Atu3818 at 914.729 kb on - strand, within Atu3818 at 914.776 kb on + strand, within Atu3818 at 914.834 kb on - strand, within Atu3818 at 914.834 kb on - strand, within Atu3818 at 914.952 kb on + strand, within Atu3818 at 914.960 kb on - strand, within Atu3818 at 915.024 kb on + strand, within Atu3818 at 915.089 kb on - strand, within Atu3818 at 915.267 kb on - strand, within Atu3818 at 915.267 kb on - strand, within Atu3818 at 915.335 kb on + strand, within Atu3818 at 915.352 kb on + strand, within Atu3818 at 915.352 kb on + strand, within Atu3818 at 915.380 kb on - strand, within Atu3818 at 915.395 kb on + strand, within Atu3818 at 915.403 kb on - strand, within Atu3818 at 915.413 kb on - strand, within Atu3818 at 915.483 kb on + strand, within Atu3818 at 915.535 kb on + strand, within Atu3818 at 915.546 kb on + strand, within Atu3818 at 915.554 kb on - strand, within Atu3818 at 915.566 kb on - strand, within Atu3818 at 915.602 kb on - strand, within Atu3818 at 915.649 kb on - strand, within Atu3818 at 915.685 kb on + strand at 915.723 kb on + strand at 915.739 kb on - strand at 915.840 kb on + strand at 916.024 kb on + strand, within Atu3819 at 916.132 kb on + strand, within Atu3819 at 916.208 kb on + strand, within Atu3819 at 916.406 kb on - strand, within Atu3819 at 916.406 kb on - strand, within Atu3819 at 916.426 kb on + strand, within Atu3819 at 916.458 kb on + strand, within Atu3819 at 916.466 kb on - strand, within Atu3819 at 916.490 kb on - strand, within Atu3819 at 916.537 kb on - strand, within Atu3819 at 916.542 kb on - strand, within Atu3819 at 916.544 kb on + strand, within Atu3819 at 916.567 kb on - strand, within Atu3819 at 916.572 kb on + strand, within Atu3819 at 916.671 kb on + strand, within Atu3819 at 916.705 kb on - strand, within Atu3819 at 916.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 913,322 - Atu3817 0.43 -0.0 913,460 - Atu3817 0.52 -0.0 913,460 - Atu3817 0.52 +1.3 913,607 + Atu3817 0.62 +0.4 913,671 + Atu3817 0.66 +0.0 913,678 - Atu3817 0.66 -0.2 913,816 - Atu3817 0.76 +1.1 913,816 - Atu3817 0.76 +0.3 913,894 + Atu3817 0.81 -0.1 913,934 - Atu3817 0.83 +0.2 913,965 - Atu3817 0.85 +0.3 913,980 + Atu3817 0.86 -2.1 914,023 - Atu3817 0.89 +0.9 914,232 - +1.1 914,319 - +0.2 914,370 + +0.1 914,402 + -0.4 914,402 + +0.2 914,481 + Atu3818 0.11 -0.1 914,481 + Atu3818 0.11 -0.5 914,481 + Atu3818 0.11 -0.0 914,481 + Atu3818 0.11 -0.7 914,533 - Atu3818 0.15 -1.2 914,536 + Atu3818 0.15 +1.0 914,600 + Atu3818 0.19 -0.1 914,610 - Atu3818 0.20 -0.4 914,729 - Atu3818 0.28 +0.4 914,776 + Atu3818 0.31 +0.2 914,834 - Atu3818 0.35 +0.1 914,834 - Atu3818 0.35 -0.9 914,952 + Atu3818 0.42 -0.0 914,960 - Atu3818 0.43 -0.5 915,024 + Atu3818 0.47 +0.2 915,089 - Atu3818 0.52 +0.2 915,267 - Atu3818 0.63 -0.3 915,267 - Atu3818 0.63 -1.3 915,335 + Atu3818 0.68 -0.3 915,352 + Atu3818 0.69 -1.1 915,352 + Atu3818 0.69 -0.0 915,380 - Atu3818 0.71 -0.1 915,395 + Atu3818 0.72 -0.2 915,403 - Atu3818 0.73 -0.7 915,413 - Atu3818 0.73 +0.0 915,483 + Atu3818 0.78 -0.0 915,535 + Atu3818 0.81 +0.0 915,546 + Atu3818 0.82 +1.3 915,554 - Atu3818 0.83 -2.0 915,566 - Atu3818 0.83 -0.4 915,602 - Atu3818 0.86 -1.1 915,649 - Atu3818 0.89 -0.9 915,685 + +0.7 915,723 + +0.4 915,739 - +0.3 915,840 + -1.2 916,024 + Atu3819 0.21 +0.3 916,132 + Atu3819 0.32 -0.6 916,208 + Atu3819 0.40 -0.2 916,406 - Atu3819 0.60 +1.8 916,406 - Atu3819 0.60 +0.7 916,426 + Atu3819 0.62 -1.2 916,458 + Atu3819 0.65 +0.1 916,466 - Atu3819 0.66 -0.2 916,490 - Atu3819 0.68 -0.4 916,537 - Atu3819 0.73 -0.3 916,542 - Atu3819 0.73 +0.1 916,544 + Atu3819 0.73 -0.4 916,567 - Atu3819 0.76 +0.2 916,572 + Atu3819 0.76 -0.3 916,671 + Atu3819 0.86 +0.4 916,705 - Atu3819 0.89 -0.8 916,760 + -0.2
Or see this region's nucleotide sequence