Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3772 and Atu3773 are separated by 2 nucleotides Atu3773 and Atu3774 are separated by 73 nucleotides
Atu3772: Atu3772 - hypothetical protein, at 855,841 to 856,890
Atu3772
Atu3773: Atu3773 - hypothetical protein, at 856,893 to 857,357
Atu3773
Atu3774: Atu3774 - capsule expression protein, at 857,431 to 858,426
Atu3774
Position (kb) 856
857
858 Strain fitness (log2 ratio) -1
0
1
2 at 855.915 kb on + strand at 855.923 kb on - strand at 855.923 kb on - strand at 855.933 kb on + strand at 855.949 kb on + strand, within Atu3772 at 856.040 kb on + strand, within Atu3772 at 856.285 kb on + strand, within Atu3772 at 856.359 kb on - strand, within Atu3772 at 856.391 kb on - strand, within Atu3772 at 856.513 kb on - strand, within Atu3772 at 856.565 kb on + strand, within Atu3772 at 856.608 kb on - strand, within Atu3772 at 856.614 kb on - strand, within Atu3772 at 856.700 kb on + strand, within Atu3772 at 856.772 kb on - strand, within Atu3772 at 856.779 kb on - strand, within Atu3772 at 856.790 kb on + strand at 856.834 kb on - strand at 856.923 kb on + strand at 856.931 kb on - strand at 856.968 kb on - strand, within Atu3773 at 857.245 kb on + strand, within Atu3773 at 857.257 kb on - strand, within Atu3773 at 857.288 kb on - strand, within Atu3773 at 857.366 kb on - strand at 857.366 kb on - strand at 857.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 855,915 + +2.1 855,923 - +0.3 855,923 - -0.4 855,933 + -0.4 855,949 + Atu3772 0.10 +0.7 856,040 + Atu3772 0.19 -0.3 856,285 + Atu3772 0.42 -0.4 856,359 - Atu3772 0.49 +0.1 856,391 - Atu3772 0.52 -0.8 856,513 - Atu3772 0.64 +0.2 856,565 + Atu3772 0.69 -0.7 856,608 - Atu3772 0.73 -0.2 856,614 - Atu3772 0.74 +1.2 856,700 + Atu3772 0.82 +0.6 856,772 - Atu3772 0.89 +0.3 856,779 - Atu3772 0.89 -0.2 856,790 + +0.4 856,834 - +0.0 856,923 + -0.6 856,931 - +1.4 856,968 - Atu3773 0.16 -0.8 857,245 + Atu3773 0.76 -0.6 857,257 - Atu3773 0.78 +0.1 857,288 - Atu3773 0.85 -0.6 857,366 - +0.1 857,366 - -0.2 857,428 + -0.8
Or see this region's nucleotide sequence