Strain Fitness in Agrobacterium fabrum C58 around Atu1986

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,949,937	-		Atu1984	0.64	-0.0
1,949,937	-		Atu1984	0.64	-0.2
1,950,041	+		Atu1984	0.74	+0.9
1,950,159	+		Atu1984	0.86	+0.6
1,950,228	-				-0.3
1,950,228	-				+0.3
1,950,228	-				-0.5
1,950,228	-				+0.0
1,950,317	-				-2.1
1,950,488	+		Atu1985	0.40	-0.2
1,950,773	+				-0.0
1,950,779	-				-0.1
1,950,804	-				-0.0
1,950,831	+				-0.7
1,951,024	-		Atu1986	0.19	-0.1
1,951,182	+		Atu1986	0.30	-1.0
1,951,182	+		Atu1986	0.30	+1.8
1,951,182	+		Atu1986	0.30	+1.0
1,951,265	-		Atu1986	0.36	+0.5
1,951,277	-		Atu1986	0.36	-0.7
1,951,326	+		Atu1986	0.40	+0.8
1,951,326	+		Atu1986	0.40	+0.9
1,951,334	-		Atu1986	0.40	-0.1
1,951,407	+		Atu1986	0.45	+0.3
1,951,474	+		Atu1986	0.50	+2.3
1,951,482	-		Atu1986	0.51	+0.2
1,951,596	-		Atu1986	0.58	+0.1
1,951,606	-		Atu1986	0.59	+0.5
1,951,647	+		Atu1986	0.62	+0.6
1,951,675	+		Atu1986	0.64	+0.1
1,951,675	+		Atu1986	0.64	+0.5
1,951,675	+		Atu1986	0.64	+0.2
1,951,676	-		Atu1986	0.64	+0.5
1,951,683	-		Atu1986	0.64	-1.6
1,951,683	-		Atu1986	0.64	-0.5
1,951,683	-		Atu1986	0.64	+1.1
1,951,699	-		Atu1986	0.65	+0.3
1,951,815	+		Atu1986	0.73	+1.6
1,951,816	+		Atu1986	0.74	-0.7
1,951,876	-		Atu1986	0.78	+1.1
1,951,954	+		Atu1986	0.83	+0.0
1,952,034	-		Atu1986	0.89	+0.8
1,952,037	-		Atu1986	0.89	-0.8
1,952,037	-		Atu1986	0.89	+1.3
1,952,046	+		Atu1986	0.89	-0.3
1,952,075	+				-0.3
1,952,083	-				-1.0
1,952,121	+				-0.6
1,952,140	+				-1.1
1,952,170	-				-0.8
1,952,343	+				-0.2
1,952,361	-				+0.1
1,952,361	-				+0.5
1,952,372	+				-0.2
1,952,372	+				-0.4
1,952,380	-				+1.8
1,952,542	-		Atu1987	0.35	-0.6
1,952,563	+		Atu1987	0.41	+0.3
1,952,618	+		Atu1987	0.55	-0.5
1,952,628	+		Atu1987	0.58	-0.0
1,952,641	+		Atu1987	0.62	+0.3
1,952,649	-		Atu1987	0.64	+0.3
1,952,678	+		Atu1987	0.71	+0.1
1,952,680	+		Atu1987	0.72	+0.1
1,952,706	+		Atu1987	0.79	+0.3
1,952,713	-		Atu1987	0.81	-0.5
1,952,717	+		Atu1987	0.82	-0.0
1,952,717	+		Atu1987	0.82	+0.1
1,952,725	-		Atu1987	0.84	-0.4
1,952,727	-		Atu1987	0.85	+1.0
1,952,790	+				-0.1
1,952,841	+				+0.6
1,952,936	+				-0.9
1,952,955	+		Atu1988	0.12	-2.0
1,952,963	-		Atu1988	0.13	+0.0
1,952,998	-		Atu1988	0.16	+0.2
1,953,116	+		Atu1988	0.28	+0.5
1,953,160	-		Atu1988	0.32	-0.1
1,953,170	-		Atu1988	0.33	+1.0
1,953,170	-		Atu1988	0.33	-0.7
1,953,179	-		Atu1988	0.34	+2.6
1,953,183	-		Atu1988	0.35	-0.1
1,953,196	+		Atu1988	0.36	+0.5