Strain Fitness in Agrobacterium fabrum C58 around Atu1135

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,123,105	+		Atu1134	0.15	-0.1
1,123,107	+		Atu1134	0.15	-1.3
1,123,132	-		Atu1134	0.18	-0.4
1,123,132	-		Atu1134	0.18	-0.9
1,123,137	-		Atu1134	0.18	-0.1
1,123,224	+		Atu1134	0.28	+0.2
1,123,224	+		Atu1134	0.28	-2.5
1,123,224	+		Atu1134	0.28	+0.5
1,123,232	-		Atu1134	0.28	-0.2
1,123,234	+		Atu1134	0.29	+0.9
1,123,242	-		Atu1134	0.30	-1.6
1,123,242	-		Atu1134	0.30	+0.2
1,123,309	-		Atu1134	0.37	-0.6
1,123,509	+		Atu1134	0.58	-0.1
1,123,517	-		Atu1134	0.59	+0.5
1,123,543	+		Atu1134	0.61	-0.5
1,123,543	+		Atu1134	0.61	+0.7
1,123,543	+		Atu1134	0.61	+0.3
1,123,543	+		Atu1134	0.61	-1.0
1,123,543	+		Atu1134	0.61	-0.2
1,123,551	-		Atu1134	0.62	-0.6
1,123,551	-		Atu1134	0.62	+0.1
1,123,551	-		Atu1134	0.62	+0.4
1,123,551	-		Atu1134	0.62	+0.8
1,123,551	-		Atu1134	0.62	-0.1
1,123,551	-		Atu1134	0.62	+0.2
1,123,551	-		Atu1134	0.62	-0.4
1,123,551	-		Atu1134	0.62	-1.1
1,123,641	-		Atu1134	0.72	-0.6
1,123,687	+		Atu1134	0.76	-0.8
1,123,793	+		Atu1134	0.88	+0.2
1,123,819	+				-0.2
1,123,828	-				+0.7
1,123,912	+				+0.2
1,123,921	+				+0.4
1,123,982	-				-0.2
1,124,057	+		Atu1135	0.17	+0.4
1,124,057	+		Atu1135	0.17	-0.4
1,124,065	-		Atu1135	0.17	-0.7
1,124,065	-		Atu1135	0.17	-0.2
1,124,102	+		Atu1135	0.22	-0.0
1,124,102	+		Atu1135	0.22	+0.1
1,124,105	-		Atu1135	0.22	-0.6
1,124,110	-		Atu1135	0.23	-1.0
1,124,110	-		Atu1135	0.23	-0.3
1,124,134	-		Atu1135	0.25	+0.0
1,124,182	+		Atu1135	0.31	-1.6
1,124,232	-		Atu1135	0.37	-1.0
1,124,232	-		Atu1135	0.37	+0.3
1,124,318	+		Atu1135	0.47	-0.5
1,124,330	+		Atu1135	0.48	-0.0
1,124,527	+		Atu1135	0.71	-0.1
1,124,533	+		Atu1135	0.72	+0.3
1,124,535	-		Atu1135	0.72	-0.1
1,124,569	+		Atu1135	0.76	+1.8
1,124,577	-		Atu1135	0.77	+0.0
1,124,577	-		Atu1135	0.77	+0.3
1,124,667	-		Atu1135	0.87	+0.8
1,124,677	+		Atu1135	0.88	-0.4
1,124,696	-				-0.0
1,124,813	+				+1.6
1,124,946	+				+0.4
1,124,954	-				+0.4
1,125,059	+				-0.8
1,125,087	+				-0.1
1,125,126	-		Atu1136	0.11	-1.4
1,125,291	+		Atu1136	0.19	-0.4
1,125,302	+		Atu1136	0.19	+1.6
1,125,369	+		Atu1136	0.22	+0.1
1,125,394	+		Atu1136	0.24	+0.2
1,125,447	-		Atu1136	0.26	-0.3
1,125,458	-		Atu1136	0.27	+1.0
1,125,477	-		Atu1136	0.27	+0.0
1,125,607	+		Atu1136	0.33	-0.3
1,125,610	-		Atu1136	0.34	-1.3
1,125,610	-		Atu1136	0.34	-0.2
1,125,610	-		Atu1136	0.34	+1.4
1,125,615	-		Atu1136	0.34	+0.1
1,125,615	-		Atu1136	0.34	-0.2
1,125,615	-		Atu1136	0.34	+0.6
1,125,615	-		Atu1136	0.34	-0.8
1,125,655	+		Atu1136	0.36	+0.3
1,125,701	+		Atu1136	0.38	+0.9
1,125,709	-		Atu1136	0.38	+0.7
1,125,760	+		Atu1136	0.41	+0.3
1,125,760	+		Atu1136	0.41	-0.2