Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0473 and Atu0474 are separated by 76 nucleotides Atu0474 and Atu0475 overlap by 4 nucleotides Atu0475 and Atu0476 are separated by 268 nucleotides
Atu0473: Atu0473 - hypothetical protein, at 461,846 to 462,760
Atu0473
Atu0474: Atu0474 - putative RNA polymerase sigma-70 factor, at 462,837 to 463,382
Atu0474
Atu0475: Atu0475 - hypothetical protein, at 463,379 to 464,083
Atu0475
Atu0476: Atu0476 - aquaporin, at 464,352 to 465,077
Atu0476
Position (kb) 462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 461.940 kb on + strand, within Atu0473 at 461.947 kb on + strand, within Atu0473 at 461.948 kb on - strand, within Atu0473 at 461.950 kb on - strand, within Atu0473 at 461.950 kb on - strand, within Atu0473 at 461.955 kb on - strand, within Atu0473 at 461.978 kb on - strand, within Atu0473 at 462.012 kb on - strand, within Atu0473 at 462.028 kb on + strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.186 kb on + strand, within Atu0473 at 462.268 kb on - strand, within Atu0473 at 462.268 kb on - strand, within Atu0473 at 462.319 kb on + strand, within Atu0473 at 462.319 kb on + strand, within Atu0473 at 462.327 kb on - strand, within Atu0473 at 462.333 kb on - strand, within Atu0473 at 462.390 kb on - strand, within Atu0473 at 462.409 kb on + strand, within Atu0473 at 462.469 kb on + strand, within Atu0473 at 462.487 kb on - strand, within Atu0473 at 462.516 kb on - strand, within Atu0473 at 462.625 kb on - strand, within Atu0473 at 462.630 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.650 kb on + strand, within Atu0473 at 462.882 kb on - strand at 463.010 kb on + strand, within Atu0474 at 463.015 kb on + strand, within Atu0474 at 463.026 kb on + strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.137 kb on + strand, within Atu0474 at 463.153 kb on + strand, within Atu0474 at 463.419 kb on + strand at 463.424 kb on + strand at 463.424 kb on + strand at 463.444 kb on + strand at 463.452 kb on - strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.539 kb on + strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.662 kb on + strand, within Atu0475 at 463.715 kb on + strand, within Atu0475 at 463.745 kb on - strand, within Atu0475 at 463.834 kb on - strand, within Atu0475 at 463.837 kb on - strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.867 kb on + strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.879 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.932 kb on + strand, within Atu0475 at 463.987 kb on + strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.127 kb on - strand at 464.220 kb on + strand at 464.228 kb on - strand at 464.228 kb on - strand at 464.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 461,940 + Atu0473 0.10 -0.5 461,947 + Atu0473 0.11 -0.7 461,948 - Atu0473 0.11 +0.1 461,950 - Atu0473 0.11 +0.8 461,950 - Atu0473 0.11 +2.1 461,955 - Atu0473 0.12 -0.1 461,978 - Atu0473 0.14 +0.1 462,012 - Atu0473 0.18 +0.5 462,028 + Atu0473 0.20 +0.5 462,119 - Atu0473 0.30 +0.9 462,119 - Atu0473 0.30 +0.4 462,119 - Atu0473 0.30 +0.3 462,186 + Atu0473 0.37 +0.1 462,268 - Atu0473 0.46 -0.5 462,268 - Atu0473 0.46 +1.5 462,319 + Atu0473 0.52 +0.1 462,319 + Atu0473 0.52 -0.1 462,327 - Atu0473 0.53 +0.3 462,333 - Atu0473 0.53 +0.8 462,390 - Atu0473 0.59 -0.3 462,409 + Atu0473 0.62 +0.3 462,469 + Atu0473 0.68 -0.6 462,487 - Atu0473 0.70 -0.6 462,516 - Atu0473 0.73 +0.5 462,625 - Atu0473 0.85 -0.1 462,630 - Atu0473 0.86 -2.2 462,635 - Atu0473 0.86 +0.2 462,635 - Atu0473 0.86 +1.5 462,650 + Atu0473 0.88 +0.3 462,882 - +0.0 463,010 + Atu0474 0.32 +0.6 463,015 + Atu0474 0.33 -0.4 463,026 + Atu0474 0.35 +0.1 463,034 - Atu0474 0.36 -2.8 463,034 - Atu0474 0.36 -0.1 463,034 - Atu0474 0.36 -0.6 463,137 + Atu0474 0.55 -0.1 463,153 + Atu0474 0.58 -0.9 463,419 + +0.3 463,424 + +2.2 463,424 + -0.8 463,444 + +0.5 463,452 - Atu0475 0.10 -0.3 463,475 + Atu0475 0.14 -0.3 463,475 + Atu0475 0.14 -0.3 463,539 + Atu0475 0.23 +0.6 463,564 - Atu0475 0.26 -0.3 463,564 - Atu0475 0.26 -0.4 463,564 - Atu0475 0.26 +0.4 463,662 + Atu0475 0.40 -0.1 463,715 + Atu0475 0.48 +0.9 463,745 - Atu0475 0.52 -0.0 463,834 - Atu0475 0.65 +1.5 463,837 - Atu0475 0.65 +0.2 463,861 + Atu0475 0.68 -0.0 463,861 + Atu0475 0.68 -0.0 463,867 + Atu0475 0.69 +0.2 463,869 - Atu0475 0.70 -1.2 463,869 - Atu0475 0.70 +0.0 463,876 + Atu0475 0.70 +0.3 463,876 + Atu0475 0.70 -0.5 463,876 + Atu0475 0.70 -0.0 463,879 - Atu0475 0.71 +2.5 463,884 - Atu0475 0.72 +1.1 463,884 - Atu0475 0.72 -0.8 463,884 - Atu0475 0.72 +0.4 463,932 + Atu0475 0.78 -0.1 463,987 + Atu0475 0.86 -0.0 464,009 - Atu0475 0.89 +1.5 464,009 - Atu0475 0.89 -1.9 464,127 - -0.2 464,220 + +0.2 464,228 - -0.2 464,228 - -0.2 464,347 + -0.4
Or see this region's nucleotide sequence