Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3477 and Atu3478 are separated by 8 nucleotides Atu3478 and Atu3479 are separated by 7 nucleotides
Atu3477: Atu3477 - acyl-CoA dehydrogenase, at 524,524 to 525,696
Atu3477
Atu3478: Atu3478 - 3-methylcrotonoyl-CoA carboxylase beta subunit, at 525,705 to 527,306
Atu3478
Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305
Atu3479
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -2
-1
0
1 at 524.710 kb on - strand, within Atu3477 at 524.721 kb on + strand, within Atu3477 at 524.739 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.831 kb on - strand, within Atu3477 at 524.831 kb on - strand, within Atu3477 at 524.973 kb on + strand, within Atu3477 at 524.973 kb on + strand, within Atu3477 at 524.981 kb on - strand, within Atu3477 at 524.987 kb on - strand, within Atu3477 at 525.069 kb on - strand, within Atu3477 at 525.112 kb on + strand, within Atu3477 at 525.133 kb on + strand, within Atu3477 at 525.173 kb on + strand, within Atu3477 at 525.181 kb on - strand, within Atu3477 at 525.441 kb on + strand, within Atu3477 at 525.456 kb on - strand, within Atu3477 at 525.466 kb on + strand, within Atu3477 at 525.487 kb on - strand, within Atu3477 at 525.676 kb on - strand at 525.678 kb on + strand at 525.678 kb on + strand at 525.678 kb on + strand at 525.685 kb on + strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.692 kb on + strand at 525.771 kb on + strand at 526.053 kb on - strand, within Atu3478 at 526.085 kb on + strand, within Atu3478 at 526.146 kb on - strand, within Atu3478 at 526.233 kb on + strand, within Atu3478 at 526.258 kb on + strand, within Atu3478 at 526.352 kb on + strand, within Atu3478 at 526.379 kb on - strand, within Atu3478 at 526.389 kb on + strand, within Atu3478 at 526.474 kb on - strand, within Atu3478 at 526.509 kb on - strand, within Atu3478 at 526.565 kb on + strand, within Atu3478 at 526.570 kb on + strand, within Atu3478 at 526.622 kb on - strand, within Atu3478 at 526.632 kb on - strand, within Atu3478 at 526.682 kb on - strand, within Atu3478 at 526.890 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 526.979 kb on + strand, within Atu3478 at 527.045 kb on + strand, within Atu3478 at 527.104 kb on + strand, within Atu3478 at 527.232 kb on + strand at 527.240 kb on - strand at 527.265 kb on - strand at 527.389 kb on - strand at 527.439 kb on + strand at 527.443 kb on - strand at 527.534 kb on + strand, within Atu3479 at 527.614 kb on + strand, within Atu3479 at 527.796 kb on - strand, within Atu3479 at 528.004 kb on + strand, within Atu3479 at 528.052 kb on - strand, within Atu3479 at 528.083 kb on - strand, within Atu3479 at 528.131 kb on + strand, within Atu3479 at 528.192 kb on + strand, within Atu3479 at 528.273 kb on + strand, within Atu3479 at 528.287 kb on - strand, within Atu3479
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 524,710 - Atu3477 0.16 -1.1 524,721 + Atu3477 0.17 -0.4 524,739 + Atu3477 0.18 -0.4 524,823 + Atu3477 0.25 +1.1 524,823 + Atu3477 0.25 -0.7 524,831 - Atu3477 0.26 -0.4 524,831 - Atu3477 0.26 -0.9 524,973 + Atu3477 0.38 -0.2 524,973 + Atu3477 0.38 -0.7 524,981 - Atu3477 0.39 +0.1 524,987 - Atu3477 0.39 +0.7 525,069 - Atu3477 0.46 -0.7 525,112 + Atu3477 0.50 +0.3 525,133 + Atu3477 0.52 -0.9 525,173 + Atu3477 0.55 -0.4 525,181 - Atu3477 0.56 -0.0 525,441 + Atu3477 0.78 -0.3 525,456 - Atu3477 0.79 -0.2 525,466 + Atu3477 0.80 +1.3 525,487 - Atu3477 0.82 -1.1 525,676 - -0.4 525,678 + -0.3 525,678 + -0.3 525,678 + -0.0 525,685 + -2.1 525,686 - -0.1 525,686 - -1.5 525,686 - -0.7 525,686 - -0.1 525,692 + -1.0 525,771 + -0.7 526,053 - Atu3478 0.22 +1.3 526,085 + Atu3478 0.24 -0.5 526,146 - Atu3478 0.28 -0.1 526,233 + Atu3478 0.33 -0.8 526,258 + Atu3478 0.35 -0.8 526,352 + Atu3478 0.40 -0.9 526,379 - Atu3478 0.42 +0.3 526,389 + Atu3478 0.43 -1.5 526,474 - Atu3478 0.48 -0.6 526,509 - Atu3478 0.50 +0.7 526,565 + Atu3478 0.54 -0.5 526,570 + Atu3478 0.54 -1.5 526,622 - Atu3478 0.57 +0.9 526,632 - Atu3478 0.58 -0.4 526,682 - Atu3478 0.61 -1.1 526,890 + Atu3478 0.74 -0.7 526,979 + Atu3478 0.80 -0.3 526,979 + Atu3478 0.80 -1.3 526,979 + Atu3478 0.80 +1.3 527,045 + Atu3478 0.84 -0.9 527,104 + Atu3478 0.87 +1.3 527,232 + -1.7 527,240 - -0.6 527,265 - -0.9 527,389 - -0.5 527,439 + -1.0 527,443 - -2.0 527,534 + Atu3479 0.11 -2.5 527,614 + Atu3479 0.15 -0.6 527,796 - Atu3479 0.24 +0.5 528,004 + Atu3479 0.35 -0.6 528,052 - Atu3479 0.37 -0.5 528,083 - Atu3479 0.39 +0.3 528,131 + Atu3479 0.41 +0.9 528,192 + Atu3479 0.44 -0.7 528,273 + Atu3479 0.48 -0.8 528,287 - Atu3479 0.49 -1.3
Or see this region's nucleotide sequence