Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3134 and Atu3135 are separated by 29 nucleotides Atu3135 and Atu3136 are separated by 0 nucleotides Atu3136 and Atu3137 are separated by 70 nucleotides
Atu3134: Atu3134 - AraC family transcriptional regulator, at 142,157 to 143,083
Atu3134
Atu3135: Atu3135 - ABC transporter permease, at 143,113 to 144,393
Atu3135
Atu3136: Atu3136 - ABC transporter permease, at 144,394 to 144,915
Atu3136
Atu3137: Atu3137 - C4-dicarboxylate-binding protein, at 144,986 to 145,963
Atu3137
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 142.209 kb on + strand at 142.217 kb on - strand at 142.289 kb on + strand, within Atu3134 at 142.296 kb on - strand, within Atu3134 at 142.297 kb on - strand, within Atu3134 at 142.299 kb on + strand, within Atu3134 at 142.307 kb on - strand, within Atu3134 at 142.352 kb on - strand, within Atu3134 at 142.379 kb on + strand, within Atu3134 at 142.548 kb on - strand, within Atu3134 at 142.564 kb on - strand, within Atu3134 at 142.609 kb on - strand, within Atu3134 at 142.614 kb on + strand, within Atu3134 at 142.696 kb on + strand, within Atu3134 at 142.704 kb on - strand, within Atu3134 at 142.742 kb on - strand, within Atu3134 at 142.962 kb on + strand, within Atu3134 at 143.039 kb on + strand at 143.175 kb on + strand at 143.264 kb on + strand, within Atu3135 at 143.414 kb on + strand, within Atu3135 at 143.513 kb on - strand, within Atu3135 at 143.656 kb on - strand, within Atu3135 at 143.656 kb on - strand, within Atu3135 at 143.756 kb on + strand, within Atu3135 at 143.787 kb on + strand, within Atu3135 at 143.809 kb on - strand, within Atu3135 at 143.809 kb on - strand, within Atu3135 at 143.933 kb on - strand, within Atu3135 at 143.990 kb on + strand, within Atu3135 at 143.998 kb on - strand, within Atu3135 at 144.039 kb on - strand, within Atu3135 at 144.104 kb on + strand, within Atu3135 at 144.112 kb on - strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.114 kb on + strand, within Atu3135 at 144.197 kb on - strand, within Atu3135 at 144.300 kb on - strand at 144.361 kb on + strand at 144.369 kb on - strand at 144.430 kb on + strand at 144.537 kb on + strand, within Atu3136 at 144.586 kb on + strand, within Atu3136 at 144.605 kb on + strand, within Atu3136 at 144.623 kb on - strand, within Atu3136 at 144.705 kb on + strand, within Atu3136 at 144.731 kb on + strand, within Atu3136 at 144.759 kb on + strand, within Atu3136 at 144.845 kb on - strand, within Atu3136 at 145.052 kb on + strand at 145.060 kb on - strand at 145.156 kb on - strand, within Atu3137 at 145.218 kb on - strand, within Atu3137 at 145.280 kb on - strand, within Atu3137 at 145.374 kb on + strand, within Atu3137 at 145.374 kb on + strand, within Atu3137
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 142,209 + +0.2 142,217 - +0.3 142,289 + Atu3134 0.14 -0.1 142,296 - Atu3134 0.15 +0.1 142,297 - Atu3134 0.15 -0.1 142,299 + Atu3134 0.15 -0.8 142,307 - Atu3134 0.16 -0.0 142,352 - Atu3134 0.21 -0.3 142,379 + Atu3134 0.24 +0.1 142,548 - Atu3134 0.42 +0.0 142,564 - Atu3134 0.44 +0.9 142,609 - Atu3134 0.49 +0.0 142,614 + Atu3134 0.49 -0.7 142,696 + Atu3134 0.58 +0.3 142,704 - Atu3134 0.59 -0.7 142,742 - Atu3134 0.63 -0.9 142,962 + Atu3134 0.87 -1.4 143,039 + -0.3 143,175 + -0.4 143,264 + Atu3135 0.12 -0.2 143,414 + Atu3135 0.23 -0.7 143,513 - Atu3135 0.31 -0.1 143,656 - Atu3135 0.42 +0.0 143,656 - Atu3135 0.42 +0.8 143,756 + Atu3135 0.50 +1.3 143,787 + Atu3135 0.53 +0.3 143,809 - Atu3135 0.54 +1.3 143,809 - Atu3135 0.54 -0.1 143,933 - Atu3135 0.64 -0.2 143,990 + Atu3135 0.68 -2.3 143,998 - Atu3135 0.69 +0.1 144,039 - Atu3135 0.72 -0.1 144,104 + Atu3135 0.77 -0.8 144,112 - Atu3135 0.78 -1.0 144,114 + Atu3135 0.78 -0.2 144,114 + Atu3135 0.78 +0.0 144,197 - Atu3135 0.85 +0.1 144,300 - -0.2 144,361 + -1.4 144,369 - +0.3 144,430 + +0.9 144,537 + Atu3136 0.27 +0.4 144,586 + Atu3136 0.37 +0.3 144,605 + Atu3136 0.40 +0.3 144,623 - Atu3136 0.44 -0.2 144,705 + Atu3136 0.60 +0.5 144,731 + Atu3136 0.65 -0.1 144,759 + Atu3136 0.70 +0.2 144,845 - Atu3136 0.86 -0.2 145,052 + +0.5 145,060 - +0.0 145,156 - Atu3137 0.17 -0.4 145,218 - Atu3137 0.24 -0.4 145,280 - Atu3137 0.30 -0.4 145,374 + Atu3137 0.40 -0.1 145,374 + Atu3137 0.40 +1.9
Or see this region's nucleotide sequence