Strain Fitness in Escherichia coli BW25113 around b2804

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucK and fucU are separated by 1 nucleotidesfucU and fucR are separated by 57 nucleotidesfucR and ygdE are separated by 43 nucleotides b2803: fucK - L-fuculokinase (NCBI), at 2,935,460 to 2,936,908 fucK b2804: fucU - L-fucose mutarotase (NCBI), at 2,936,910 to 2,937,332 fucU b2805: fucR - DNA-binding transcriptional activator (NCBI), at 2,937,390 to 2,938,121 fucR b2806: ygdE - predicted methyltransferase (NCBI), at 2,938,165 to 2,939,265 ygdE Position (kb) 2936 2937 2938Strain fitness (log2 ratio) -3 -2 -1 0 1at 2935.929 kb on + strand, within fucKat 2935.929 kb on + strand, within fucKat 2936.145 kb on - strand, within fucKat 2936.230 kb on + strand, within fucKat 2936.304 kb on + strand, within fucKat 2936.330 kb on + strand, within fucKat 2936.330 kb on + strand, within fucKat 2936.382 kb on - strand, within fucKat 2936.382 kb on - strand, within fucKat 2936.392 kb on - strand, within fucKat 2936.441 kb on + strand, within fucKat 2936.538 kb on + strand, within fucKat 2936.538 kb on + strand, within fucKat 2936.628 kb on + strand, within fucKat 2936.630 kb on + strand, within fucKat 2936.630 kb on + strand, within fucKat 2936.656 kb on + strand, within fucKat 2936.656 kb on + strand, within fucKat 2936.664 kb on - strand, within fucKat 2936.664 kb on - strand, within fucKat 2936.808 kb on - strandat 2936.845 kb on + strandat 2936.845 kb on + strandat 2936.974 kb on - strand, within fucUat 2936.974 kb on - strand, within fucUat 2937.103 kb on + strand, within fucUat 2937.103 kb on + strand, within fucUat 2937.173 kb on + strand, within fucUat 2937.434 kb on - strandat 2937.434 kb on - strandat 2937.439 kb on - strandat 2937.473 kb on - strand, within fucRat 2937.629 kb on + strand, within fucRat 2937.677 kb on - strand, within fucRat 2937.677 kb on - strand, within fucRat 2937.681 kb on + strand, within fucRat 2937.747 kb on - strand, within fucRat 2937.769 kb on + strand, within fucRat 2937.769 kb on + strand, within fucRat 2937.811 kb on - strand, within fucRat 2937.811 kb on - strand, within fucRat 2937.817 kb on + strand, within fucRat 2937.862 kb on + strand, within fucRat 2938.088 kb on + strandat 2938.132 kb on - strandat 2938.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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2,935,929 + fucK b2803 0.32 -0.5
2,935,929 + fucK b2803 0.32 -0.9
2,936,145 - fucK b2803 0.47 -0.2
2,936,230 + fucK b2803 0.53 +0.1
2,936,304 + fucK b2803 0.58 +0.8
2,936,330 + fucK b2803 0.60 -0.7
2,936,330 + fucK b2803 0.60 -1.5
2,936,382 - fucK b2803 0.64 -1.5
2,936,382 - fucK b2803 0.64 -0.6
2,936,392 - fucK b2803 0.64 -0.1
2,936,441 + fucK b2803 0.68 +0.2
2,936,538 + fucK b2803 0.74 +0.4
2,936,538 + fucK b2803 0.74 -3.0
2,936,628 + fucK b2803 0.81 -0.5
2,936,630 + fucK b2803 0.81 +1.0
2,936,630 + fucK b2803 0.81 +0.4
2,936,656 + fucK b2803 0.83 -0.2
2,936,656 + fucK b2803 0.83 -1.8
2,936,664 - fucK b2803 0.83 +0.2
2,936,664 - fucK b2803 0.83 -0.2
2,936,808 - -0.8
2,936,845 + -1.9
2,936,845 + -0.0
2,936,974 - fucU b2804 0.15 -0.5
2,936,974 - fucU b2804 0.15 -1.5
2,937,103 + fucU b2804 0.46 -1.1
2,937,103 + fucU b2804 0.46 -1.8
2,937,173 + fucU b2804 0.62 +1.0
2,937,434 - -1.1
2,937,434 - +1.2
2,937,439 - -0.1
2,937,473 - fucR b2805 0.11 +1.0
2,937,629 + fucR b2805 0.33 +0.3
2,937,677 - fucR b2805 0.39 +0.4
2,937,677 - fucR b2805 0.39 -0.4
2,937,681 + fucR b2805 0.40 +0.1
2,937,747 - fucR b2805 0.49 +0.4
2,937,769 + fucR b2805 0.52 -1.6
2,937,769 + fucR b2805 0.52 -2.4
2,937,811 - fucR b2805 0.58 +0.6
2,937,811 - fucR b2805 0.58 +0.8
2,937,817 + fucR b2805 0.58 -0.6
2,937,862 + fucR b2805 0.64 -0.6
2,938,088 + -0.3
2,938,132 - -0.9
2,938,204 - -0.2

Or see this region's nucleotide sequence