Strain Fitness in Escherichia coli BW25113 around b1703

Experiment: RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpps and ydiA are separated by 332 nucleotidesydiA and aroH are separated by 156 nucleotides b1702: pps - phosphoenolpyruvate synthase (NCBI), at 1,782,758 to 1,785,136 pps b1703: ydiA - hypothetical protein (NCBI), at 1,785,469 to 1,786,302 ydiA b1704: aroH - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI), at 1,786,459 to 1,787,505 aroH Position (kb) 1785 1786 1787Strain fitness (log2 ratio) -1 0 1 2at 1784.472 kb on - strand, within ppsat 1784.598 kb on + strand, within ppsat 1784.610 kb on + strand, within ppsat 1784.832 kb on + strand, within ppsat 1784.832 kb on + strand, within ppsat 1784.954 kb on + strandat 1785.015 kb on + strandat 1785.056 kb on + strandat 1785.076 kb on + strandat 1785.101 kb on + strandat 1785.101 kb on + strandat 1785.111 kb on + strandat 1785.268 kb on + strandat 1785.268 kb on + strandat 1785.399 kb on - strandat 1785.739 kb on + strand, within ydiAat 1785.765 kb on + strand, within ydiAat 1785.814 kb on - strand, within ydiAat 1785.826 kb on - strand, within ydiAat 1785.827 kb on - strand, within ydiAat 1785.827 kb on - strand, within ydiAat 1785.918 kb on + strand, within ydiAat 1785.918 kb on + strand, within ydiAat 1786.154 kb on + strand, within ydiAat 1786.164 kb on + strand, within ydiAat 1786.192 kb on + strand, within ydiAat 1786.224 kb on + strandat 1786.412 kb on + strandat 1786.464 kb on - strandat 1786.530 kb on - strandat 1786.532 kb on + strandat 1786.532 kb on + strandat 1786.543 kb on - strandat 1786.543 kb on - strandat 1786.553 kb on - strandat 1786.553 kb on - strandat 1786.632 kb on + strand, within aroHat 1786.668 kb on - strand, within aroHat 1786.668 kb on - strand, within aroHat 1786.722 kb on + strand, within aroHat 1786.897 kb on - strand, within aroHat 1787.055 kb on - strand, within aroHat 1787.210 kb on - strand, within aroHat 1787.217 kb on - strand, within aroH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RB68
remove
1,784,472 - pps b1702 0.72 -0.9
1,784,598 + pps b1702 0.77 -1.0
1,784,610 + pps b1702 0.78 +0.4
1,784,832 + pps b1702 0.87 -0.9
1,784,832 + pps b1702 0.87 -0.1
1,784,954 + -0.2
1,785,015 + -0.6
1,785,056 + -0.0
1,785,076 + -0.6
1,785,101 + +1.4
1,785,101 + +0.4
1,785,111 + +0.7
1,785,268 + +1.4
1,785,268 + +0.3
1,785,399 - +0.4
1,785,739 + ydiA b1703 0.32 -0.0
1,785,765 + ydiA b1703 0.35 -0.4
1,785,814 - ydiA b1703 0.41 -0.7
1,785,826 - ydiA b1703 0.43 +1.0
1,785,827 - ydiA b1703 0.43 -0.6
1,785,827 - ydiA b1703 0.43 -0.2
1,785,918 + ydiA b1703 0.54 +0.1
1,785,918 + ydiA b1703 0.54 +0.7
1,786,154 + ydiA b1703 0.82 +0.9
1,786,164 + ydiA b1703 0.83 +1.3
1,786,192 + ydiA b1703 0.87 -0.2
1,786,224 + +0.9
1,786,412 + +1.6
1,786,464 - +2.0
1,786,530 - +1.4
1,786,532 + -0.3
1,786,532 + +0.7
1,786,543 - +0.7
1,786,543 - +0.8
1,786,553 - +0.8
1,786,553 - +1.4
1,786,632 + aroH b1704 0.17 +0.1
1,786,668 - aroH b1704 0.20 +1.0
1,786,668 - aroH b1704 0.20 +0.4
1,786,722 + aroH b1704 0.25 +0.3
1,786,897 - aroH b1704 0.42 +0.3
1,787,055 - aroH b1704 0.57 +0.8
1,787,210 - aroH b1704 0.72 -0.1
1,787,217 - aroH b1704 0.72 +0.5

Or see this region's nucleotide sequence