Strain Fitness in Escherichia coli BW25113 around b0713

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybgJ and ybgK overlap by 7 nucleotidesybgK and ybgL overlap by 11 nucleotidesybgL and nei are separated by 35 nucleotidesnei and abrB overlap by 4 nucleotides b0711: ybgJ - predicted enzyme subunit (NCBI), at 742,816 to 743,472 ybgJ b0712: ybgK - predicted enzyme subunit (NCBI), at 743,466 to 744,398 ybgK b0713: ybgL - hypothetical protein (NCBI), at 744,388 to 745,122 ybgL b0714: nei - endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase (NCBI), at 745,158 to 745,949 nei b0715: abrB - putative transport protein (VIMSS), at 745,946 to 746,992 abrB Position (kb) 744 745 746Strain fitness (log2 ratio) -2 -1 0 1 2at 743.461 kb on + strandat 743.489 kb on + strandat 743.492 kb on + strandat 743.492 kb on + strandat 743.492 kb on + strandat 743.500 kb on - strandat 743.500 kb on - strandat 743.504 kb on + strandat 743.515 kb on - strandat 743.538 kb on + strandat 743.538 kb on + strandat 743.539 kb on + strandat 743.539 kb on + strandat 743.595 kb on - strand, within ybgKat 743.595 kb on - strand, within ybgKat 743.642 kb on + strand, within ybgKat 743.799 kb on + strand, within ybgKat 743.865 kb on - strand, within ybgKat 743.880 kb on + strand, within ybgKat 743.880 kb on + strand, within ybgKat 743.888 kb on - strand, within ybgKat 743.920 kb on - strand, within ybgKat 743.946 kb on - strand, within ybgKat 743.956 kb on + strand, within ybgKat 743.956 kb on + strand, within ybgKat 744.039 kb on + strand, within ybgKat 744.039 kb on + strand, within ybgKat 744.080 kb on + strand, within ybgKat 744.080 kb on + strand, within ybgKat 744.152 kb on + strand, within ybgKat 744.271 kb on - strand, within ybgKat 744.423 kb on - strandat 744.662 kb on - strand, within ybgLat 744.662 kb on - strand, within ybgLat 744.711 kb on + strand, within ybgLat 744.766 kb on + strand, within ybgLat 744.832 kb on - strand, within ybgLat 744.978 kb on - strand, within ybgLat 744.978 kb on - strand, within ybgLat 745.140 kb on - strandat 745.148 kb on + strandat 745.194 kb on + strandat 745.194 kb on + strandat 745.286 kb on + strand, within neiat 745.297 kb on + strand, within neiat 745.297 kb on + strand, within neiat 745.358 kb on - strand, within neiat 745.358 kb on - strand, within neiat 745.419 kb on + strand, within neiat 745.689 kb on - strand, within neiat 745.991 kb on + strandat 746.028 kb on - strandat 746.035 kb on - strandat 746.088 kb on + strand, within abrBat 746.122 kb on - strand, within abrB

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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743,461 + -0.5
743,489 + -0.5
743,492 + -1.3
743,492 + -0.2
743,492 + -1.2
743,500 - +0.1
743,500 - +1.0
743,504 + -0.6
743,515 - -0.2
743,538 + +1.2
743,538 + +0.7
743,539 + -0.8
743,539 + +0.6
743,595 - ybgK b0712 0.14 +1.0
743,595 - ybgK b0712 0.14 +0.8
743,642 + ybgK b0712 0.19 -0.9
743,799 + ybgK b0712 0.36 +0.7
743,865 - ybgK b0712 0.43 +0.0
743,880 + ybgK b0712 0.44 -1.1
743,880 + ybgK b0712 0.44 -0.2
743,888 - ybgK b0712 0.45 +0.4
743,920 - ybgK b0712 0.49 -0.1
743,946 - ybgK b0712 0.51 -1.0
743,956 + ybgK b0712 0.53 +0.0
743,956 + ybgK b0712 0.53 -0.3
744,039 + ybgK b0712 0.61 +0.1
744,039 + ybgK b0712 0.61 +0.0
744,080 + ybgK b0712 0.66 -2.4
744,080 + ybgK b0712 0.66 +0.5
744,152 + ybgK b0712 0.74 +1.9
744,271 - ybgK b0712 0.86 -0.4
744,423 - -1.4
744,662 - ybgL b0713 0.37 -0.5
744,662 - ybgL b0713 0.37 +0.9
744,711 + ybgL b0713 0.44 +1.3
744,766 + ybgL b0713 0.51 -0.1
744,832 - ybgL b0713 0.60 +0.1
744,978 - ybgL b0713 0.80 +0.1
744,978 - ybgL b0713 0.80 +0.9
745,140 - -0.1
745,148 + +0.9
745,194 + -1.8
745,194 + -0.7
745,286 + nei b0714 0.16 -0.2
745,297 + nei b0714 0.18 -1.2
745,297 + nei b0714 0.18 -1.3
745,358 - nei b0714 0.25 -0.1
745,358 - nei b0714 0.25 -0.1
745,419 + nei b0714 0.33 -0.3
745,689 - nei b0714 0.67 +0.7
745,991 + +0.6
746,028 - -0.5
746,035 - -0.1
746,088 + abrB b0715 0.14 +0.9
746,122 - abrB b0715 0.17 -1.6

Or see this region's nucleotide sequence